BRG1 mutations confer resistance to hormones in lung cancer

Retinoic acid (vitamin A) and steroids are hormones found in our body that protect against oxidative stress, reduce inflammation and are involved in cellular differentiation processes. One of the characteristics of tumours is that their cells have lost the ability to differentiate; therefore these hormones have useful properties to prevent cancer. Currently, retinoic acid and steroids are being used to treat some types of leukemia.
A study led by the research group on Genes and Cancer of the Bellvitge Biomedical Research Institute (IDIBELL) has shown that loss of BRG1 gene implies a lack of response of cells to these hormones, and therefore the tumour may continue growing.
The IDIBELL research group on Genes and Cancer led by Montse Sanchez-Cespedes discovered some years ago that the BRG1 gene, a tumour suppressor, is inactivated in non-small cell lung cancer by genetic mutations. ‘The BRG1 protein is part of a chromatin remodelling complex that regulates the expression of several genes,’ said the researcher, ‘and is related to the differentiation of lung cells, allowing cells response to certain hormones and environment vitamins like vitamin A or steroids.’
When BRG1 is mutated and therefore inactive, tumour cells do not respond to the presence of these hormones and they continue growing and spreading. For this reason, these types of tumours are refractory to treatment with these substances.
‘At the moment,’ says Montse Sanchez-Cespedes, ‘we are not able to restore the functionality of a tumour suppressor gene as BRG1 in patients. Therefore, we are still far from a therapeutic application but the discovery enables us to better understand the biology of tumours. What we will try to do in the immediate future is to look for agents that specifically destroy the cells with mutated BRG1, following the strategy of lethal synthetics’.
In any case, this finding it can be useful in advancing personalised medicine, because ‘it explains why lung cancer patients are resistant to these treatments and may serve to rule out therapies with lipid-derived hormones in patients with BRG1 mutations, not just in lung cancer but also in breast and prostate, among others. ‘ IDIBELL

Research uncovers genetic marker that could help control, eliminate PRRS virus

A collaborative discovery involving Kansas State University researchers may improve animal health and save the U.S. pork industry millions of dollars each year.
Raymond ‘Bob’ Rowland, a virologist and professor of diagnostic medicine and pathobiology, was part of the collaborative effort that discovered a genetic marker that identifies pigs with reduced susceptibility to porcine reproductive and respiratory syndrome, or PRRS. This virus costs the U.S. pork industry more than $600 million each year.
‘This discovery is what you call a first-first,’ Rowland said. ‘This discovery is the first of its kind for PRRS but also for any large food animal infectious disease. I have worked in the field for 20 years and this is one of the biggest advances I have seen.’
Rowland and researchers Jack Dekkers from Iowa State University and Joan Lunney from the Agricultural Research Service discovered a genetic marker called a quantitative trait locus, or QTL, which is associated with porcine reproductive and respiratory syndrome virus susceptibility. This discovery is a first step in controlling and eliminating the virus.
The project’s beginning and future centre around Kansas State University, Rowland said.
It begins at the university because Rowland is involved with an organisation called the PRRS Host Genetics Consortium, or PHGC, which initiated and provided more than $5 million for the research. Rowland is co-director of the consortium, which is a collaboration among the United States Department of Agriculture, the National Pork Board and Genome Canada as well as universities and industry members. Rowland is also director of the USDA-funded PRRS Coordinated Agriculture Project, known as PRRS CAP.
‘The PRRS Host Genetics Consortium takes fundamental science and turns it into utility,’ Rowland said.
Kansas State University’s new Large Animal Research Center is the site of much of the project’s experimental work. The researchers obtain multiple measurements — including growth, weight gain, performance and virus measurements — over time. They have collected samples from more than 2,000 pigs since they began the study in 2007, for a total of more than 100,000 samples that are stored or distributed to the consortium’s collaborators.
The university shipped samples to the Agricultural Research Service for genomic DNA preparations to identify differences among more than 60,000 genes. The data was transferred to Iowa State University for genetic analysis that led to the discovery of the QTL.
The collaborators at Iowa State University created a common database so that all the data collected during the project can be accessed at multiple locations by researchers and the breeding industry for the next several decades.
‘A unique aspect of this project is that we have been looking at genes that may provide long-term resistance to a lot of infections,’ Rowland said. ‘This is very important for animal health because there are a lot of diseases for which there are no cures and no vaccines. Now we have a tool to study these diseases.’
These findings open new possibilities with Kansas State University’s Biosecurity Research Institute and the future National Bio and Agro-defense Facility. Scientists can take this new genetic tool and study different infectious diseases in these world-class research facilities.
Sex-deprived fruit flies’ alcohol preference could uncover answers for human addictions Kansas State University

Experts identify inhibitor causing male pattern baldness and target for hair loss treatments

Researchers from the Perelman School of Medicine at the University of Pennsylvania have identified an abnormal amount a protein called Prostaglandin D2 in the bald scalp of men with male pattern baldness, a discovery that may lead directly to new treatments for the most common cause of hair loss in men. In both human and animal models, researchers found that a prostaglandin known as PGD2 and its derivative, 15-dPGJ2, inhibit hair growth. The PGD2-related inhibition occurred through a receptor called GPR44, which is a promising therapeutic target for androgenetic alopecia in both men and women with hair loss and thinning.
Male pattern baldness strikes 8 of 10 men under 70 years old, and causes hair follicles to shrink and produce microscopic hairs, which grow for a shorter duration of time than normal follicles.
Researchers took an unbiased approach when scanning for potential biological causes of baldness, looking in scalp tissue from balding and non-bald spots from men with male pattern baldness and then corroborating findings in mouse models. They found that levels of PGD2 were elevated in bald scalp tissue at levels 3 times greater than what was found in comparative haired scalp of men with androgenetic alopecia. When PGD2 was added to cultured hair follicles, PGD2-treated hair was significantly shortened, while PGD2’s derivative, 15-dPGJ2, completely inhibited hair growth.
‘Although a different prostaglandin was known to increase hair growth, our findings were unexpected, as prostaglandins haven’t been thought about in relation to hair loss, yet it made sense that there was an inhibitor of hair growth, based on our earlier work looking at hair follicle stem cells,’ said George Cotsarelis, MD, chair and professor of Dermatology, and senior author on the studies. In a Penn study published in the Journal of Clinical Investigation last year, underlying hair follicle stem cells were found intact, suggesting that the scalp was lacking an activator or something was inhibiting hair follicle growth.
Prostaglandins are well characterised for their role in many bodily functions — controlling cell growth, constricting and dilating smooth muscle tissue — and a different prostaglandin (F2alpha) is known to increase hair growth. Researchers found that as PGD2 inhibits hair growth, other prostaglandins work in opposition, enhancing and regulating the speed of hair growth.
While these studies looked at AGA in men, the researchers noted that prostaglandins may represent a common pathway shared by both men and women with AGA. Future studies, potentially testing topical treatments that may target GPR44, can determine whether targeting prostaglandins will benefit woman with AGA as well. Penn University

The long, err, short of it

No one really wants the short end of the stick, in this case the short end of a chromosome. Telomeres, which are DNA-protein complexes at the ends of chromosomes, can be thought of as protein ‘caps’ that protect chromosomes from deteriorating and fusing with neighbouring chromosomes.
It is typical for telomeres to shorten as cells divide and chromosomes replicate over time. Now a new study from Brigham and Women’s Hospital (BWH) suggest a strong link between telomere shortening and poor cardiovascular outcomes in patients with acute coronary syndrome.
Scientists measured telomere length in 5,044 patients with an acute coronary syndrome who were followed for 18 months.
They evaluated the risk of cardiovascular death or heart attack based on telomere length and other characteristics.
Shorter telomeres were associated with older age, male gender, smoking, prior heart attack and heart failure; although, the correlation between each individual factor and telomere length was modest. Age, for example, only accounts for seven percent of the variability in telomere length.
Telomere length was strongly associated with risk of cardiovascular death or heart attack. Patients with shorter telomeres had the highest risk. This relationship was consistent across various age groups.
‘We know that many different genetic and environmental factors, like diabetes, high cholesterol and smoking predispose patients to suffering cardiovascular events,’ said Christian T. Ruff, MD, MPH, Cardiovascular Division, BWH Department of Medicine, and lead study investigator. ‘Even when accounting for all of these other known risk factors, patients with short telomeres have an increased risk of having a heart attack or dying from heart disease.’
Taking the research findings from bench to bedside, Ruff points out that measuring telomere length may be useful in a clinical setting, providing a sort of predictor for cardiovascular events.
‘Telomere shortening may represent some sort of ‘biological clock’ which integrates the cumulative effect of environmental and genetic stresses on the body, both of which can contribute to cardiovascular events.’ said Ruff.
The researchers will continue to validate their findings to see if the relationship between telomere length and cardiovascular outcomes holds true in broader populations of patients. They also plan on experimenting on whether the rate of telomere shortening over time also predicts adverse cardiovascular events.
‘In the future, we hope to identify clinical, biochemical and genetic characteristics that predict telomere shortening,’ said Ruff. ‘We hope to have the ability to determine if therapies and medications that impact these processes may delay telomere attrition and lessen the risk of cardiovascular events in these patients.’ EurekAlert

A new test might facilitate diagnosis and drug development for Alzheimer’s disease

An international team of researchers have developed a new method for measurement of aggregated beta-amyloid – a protein complex believed to cause major nerve cell damage and dysfunction in Alzheimer’s disease. The new method might facilitate diagnosis and detection as well as development of drugs directed against aggregated beta-amyloid.
Alzheimer’s disease (AD) is the most common cause of memory decline and dementia. According to the Alzheimer World Report 2011, today around 36 million people suffer from Dementia (around 20 – 25 million are Alzheimer’s patients). These numbers will dramatically increase with the ageing populations over the next few decades. For the year 2050 the expected number of dementia patients will be 115 – 200 million (70 – 150 million Alzheimer’s cases). It is therefore important to develop new therapies and diagnostic methods to detect and treat this complex chronic neurodegenerative brain disease.
Alzheimer’s disease is characterised by aggregates in the brain, containing a protein called beta-amyloid. The neuropathology of Alzheimer’s disease has recently been linked to the neurotoxic amyloid-β (Aβ) oligomers. The crucial role of Aβ oligomers in the early events of AD is experimentally underlined. Several recent results suggest that those oligomers may cause the death of neurons and neurological dysfunctions relevant to memory. Furthermore Aβ oligomers levels are increased in brain and cerebrospinal fluid samples from people with Alzheimer’s disease. This reflects the potential of Aβ oligomers as a marker for the early diagnosis of the disease.
An international team of scien
He analysed the cerebrospinal fluid of 30 neurological patients, including 14 Alzheimer’s patients. ‘These samples provided from leading expert academic memory clinics in Germany and Sweden are of the best quality and are highly characterised in order to provide robust and reliable results on promising novel biomarker candidates’, Professor Harald Hampel of Frankfurt University, a lead investigator comments.
‘Because of the limited number of samples, however, further study is needed to confirm the results,’ said Dr. Oskar Hansson of Lund University. The study was an international co-operation with the University of California in the U.S., the Goteborg and Malmö Universities from Sweden and the University of Frankfurt in Germany.
The test might not only be used fo
tists from Germany, Sweden and the U.S. have used a new method to quantify soluble variants of aggregated beta-amyloid (Aβ oligomers) in cerebrospinal fluid by flow cytometry. "We found that patients with a greater number of Aβ oligomers in the cerebrospinal fluid had a more pronounced disease," says Dr. Alexander Navarrete Santos (the developer of this method and now employee of the Research Laboratory of the University of Halle, Department of Cardiothoracic Surgery), and first author of the study.r the early detection of AD but can also be used when developing new and effective therapies for AD. A decline in the number of Aβ oligomers in cerebrospinal fluids could be a hint for the effectiveness of new drug therapies. EurekAlert

Identifying acute myeloid leukemia gene mutations may indicate risk, best treatment

An international group of researchers, including those from Moffitt Cancer Center in Tampa, Fla., have published a paper reviewing the results of a study that analysed mutations in 18 genes of 398 patients who had acute myeloid leukemia (AML). They found that several mutated genes predicted improved outcomes when patients with certain gene mutations were given high-dose induction chemotherapy. Their findings suggest that mutational profiling could potentially be used for both risk stratification and also in helping health care providers make therapeutic decisions for some AML patients.
‘Previous studies have found that AML is a highly heterogenic disorder,’ said study co-author Hugo F. Fernandez, a senior member at Moffitt and associate chief of Moffitt’s Blood and Marrow Transplantation Division. ‘Moreover, recent studies have revealed that a number of genetic mutations in AML patients might have prognostic value. The question of the presence of these gene mutations altering outcomes based on current therapy had not been answered to date.’
Their paper cites a clinical trial carried out by the Eastern Co-operative Oncology Group (ECOG) in which dose-intensified chemotherapy improved outcomes in two age sets of AML patients. Based on these findings, the research team hypothesised that carrying out mutational analysis of all known molecular alterations occurring in more than 5 percent of patients with AML might allow for the identification of distinct, molecularly defined subgroups of patients who might benefit from dose-intensified chemotherapy.
The laboratory research team subsequently performed a mutational analysis on diagnostic samples from 398 patients enrolled in the ECOG clinical trial they cited and used patients’ frozen sample cells for extraction and profiling. The researchers validated the results of this latter group of 104 patients.
‘We found that intensification of the dose of anthracycline significantly improved outcomes and overall survival in patients with mutations in DNMT3A, NPM1 or MLL translocations,’ said Fernandez. ‘This finding suggests that mutational profiling could be used to determine which AML patients will benefit from dose-intensive induction therapy.’
‘Most importantly,’ said Fernandez, ‘this study demonstrates how integrated mutational profiling of samples from a clinical trial cohort can advance understanding of the biologic characteristics of AML.’ Moffitt Cancer Center

Biomarkers for autism discovered

An important step towards developing a rapid, inexpensive diagnostic method for autism has been take by Uppsala University, among other universities. Through advanced mass spectrometry the researchers managed to capture promising biomarkers from a tiny blood sample.
There are no acknowledged biomarkers for autism today. Researchers at Berzelii Centre and the Science for Life Laboratory in Uppsala who, in collaboration with colleagues at Linnaeus University in Sweden and the Faculty of Medicine in Tehran, Iran, who have discovered some promising biomarkers.
Many diseases are caused by protein alterations inside and outside the body’s cells. By studying protein patterns in tissue and body fluids, these alterations can be mapped to provide important information about underlying causes of disease. Sometimes protein patterns can also be used as biomarkers to enable diagnosis or as a prognosticating tool to monitor the development of a disease. In the current study disruptions of the nervous system were in focus when the scientists studied protein patterns in autism spectrum disorder (ASD).
To identify potential biomarkers (peptides or proteins), the researchers performed a detailed protein analysis of blood plasma from children with ASD compared with a control group. Using advanced mass spectrometric methods, they succeeded in identifying peptides consisting of fragments of a protein whose natural function is in the immune system, the complement factor C3 protein.
The study is based on blood samples from a relatively limited group of children, but the results indicate the potential of our methodological strategy. There is already a known connection between this protein and ASD, which further reinforces the findings, says Jonas Bergquist, professor of analytical chemistry and neurochemistry at the Department of Chemistry – BMC (Biomedical Centre) in Uppsala.
The hope is that this new set of biomarkers ultimately will lead to a reliable blood-based diagnostic tool. Uppsala University

Gene mutation identified as contributor to autism spectrum disorders

There is little argument among experts that autism spectrum disorders (ASD), complex developmental disabilities that vary widely in their severity, are caused by both genetic and environmental factors. Advances in genome sequencing now permit scientists to uncover specific mutations in DNA that are associated with ASD at unprecedented resolution. Such data are vital to understanding the genetic basis of the disorder.

A new study co-authored by UCLA researchers has led to a better understanding of the genetic contribution to autism using this new approach. By comparing siblings with and without ASD, the researchers have discovered a single instance in the affected siblings in which two independent mutations disrupt a gene called SCN2A.

Dr. Daniel Geschwind, a UCLA professor of neurology and psychiatry, and colleagues from Yale University, Carnegie Mellon University and the University of Pittsburgh completed ‘whole-exome sequencing’ of 238 parent-child quartets. A quartet is defined as two parents and one child without ASD and one child with ASD.

Instead of the time-consuming process of searching the entire genome of an individual, the researchers turned to the newer technology of whole-exome sequencing, which searches only the protein-coding regions of the genome to pinpoint the mutation that causes a particular disorder.

The researchers compared mutation rates between unaffected individuals and those with ASD within a family, then compared the ASD mutations to the entire cohort. They found multiple variations between the unaffected and affected groups. Specifically, among a total of 279 coding mutations, they identified a single instance in individual children with ASD — and not in siblings — in which two independent mutations disrupt the gene SCN2A. That same mutation was found in all the unrelated children with ASD, confirming its importance.

In addition, the researchers found many other genes with similar mutations occurring only once — these also make promising new candidates for autism susceptibility. Finally, they were able to estimate that there are likely about 1,000 or more genes that contribute to autism risk.

‘This work demonstrates that autism, in most cases, has a contribution from several genes, as the average risk imparted by one mutation is typically not sufficient,’ said Geschwind, who holds UCLA’s Gordon and Virginia MacDonald Distinguished Chair in Human Genetics and directs the UCLA Center for Autism Research and Treatment. ‘Overall, these results substantially clarify the genomic architecture of ASD, and this is an important step in attempting to better understand the genetic basis of these disorders.’ UCLA

Study identifies genes linked to post-traumatic stress disorder

Why do some people experience post-traumatic stress disorder (PTSD) while others who suffered the same ordeal do not? A new UCLA study may shed light on the answer.

UCLA scientists have linked two genes involved in serotonin production to a higher risk of developing PTSD. The findings suggest that susceptibility to PTSD is inherited, pointing to new ways of screening for and treating the disorder.

‘People can develop post-traumatic stress disorder after surviving a life-threatening ordeal like war, rape or a natural disaster,’ said lead author Dr. Armen Goenjian, a research professor of psychiatry at the Semel Institute for Neuroscience and Human Behavior at UCLA. ‘If confirmed, our findings could eventually lead to new ways to screen people at risk for PTSD and target specific medicines for preventing and treating the disorder.’

PTSD can arise following child abuse, terrorist attacks, sexual or physical assault, major accidents, natural disasters or exposure to war or combat. Symptoms include flashbacks, feeling emotionally numb or hyper-alert to danger, and avoiding situations that remind one of the original trauma.

Goenjian and his colleagues extracted the DNA of 200 adults from several generations of 12 extended families who suffered PTSD symptoms after surviving the devastating 1988 earthquake in Armenia.

In studying the families’ genes, the researchers found that persons who possessed specific variants of two genes were more likely to develop PTSD symptoms. Called TPH1 and TPH2, these genes control the production of serotonin, a brain chemical that regulates mood, sleep and alertness — all of which are disrupted in PTSD.

‘We suspect that the gene variants produce less serotonin, predisposing these family members to PTSD after exposure to violence or disaster,’ Goenjian said. ‘Our next step will be to try and replicate the findings in a larger, more heterogeneous population.’

PTSD affects about 7 percent of Americans and has become a pressing health issue for a large percentage of war veterans returning from Iraq and Afghanistan. The UCLA team’s discovery could be used to help screen people who may be at risk for developing PTSD.

‘A diagnostic tool based upon TPH1 and TPH2 could enable military leaders to identify soldiers who are at higher risk of developing PTSD and reassign their combat duties accordingly,’ Goenjian said. ‘Our findings may also help scientists uncover alternative treatments for the disorder, such as gene therapy or new drugs that regulate the chemicals responsible for PTSD symptoms.’

According to Goenjian, pinpointing genes connected with PTSD symptoms will help neuroscientists classify the disorder based on brain biology instead of clinical observation. Psychiatrists currently rely on a trial-and-error approach to identify the best medication for controlling an individual patient’s symptoms. UCLA

Scientists find unexpected new autism gene

Scientists from the Keck School of Medicine of USC have discovered the first gene associated with autism that has genome-wide significance. The discovery may allow researchers to more effectively study the causes of autism and develop new treatments for the disorder.
‘Our study shows that a highly significant genetic signal for autism pointed to a new gene, MSNP1AS,’ said Daniel B. Campbell, the study’s senior author and assistant professor of psychiatry and the behavioural sciences at the Keck School.
‘MSNP1AS is a non-coding RNA, which means it does not code for a protein. More than half of the RNAs made in the human brain are non-coding, but their functions are often unknown,’ he explained. ‘We found that expression of MSNP1AS is increased 12-fold in the brains of people with autism and discovered that it controls expression of a protein called moesin, which influences brain development and immune response. The discovery of a functional non-coding RNA opens new avenues of investigation for autism.’
Autism spectrum disorder (ASD) is a lifelong neuro-developmental disability characterised by problems with social interaction, communication and repetitive behaviours. The Centers for Disease Control and Prevention estimates that one in 88 children in the United States have an ASD.
ASD is highly heritable, suggesting that genetics are an important contributing factor, but many questions about its causes remain. There currently is no cure for the disorder.
A 2009 study published in Nature by Kai Wang, now assistant professor of psychiatry and preventive medicine at the Keck School, found a significant association of genetic risk factors underlying ASD with genetic markers on chromosome 5. The nearest genes (CDH9 and CDH10), however, were more than 1 million base pairs from the marker – too far to explain the link to autism.
Campbell and his team at the Keck School’s Zilkha Neurogenetic Institute hypothesised that a previously undetected genetic component might lie closer to the markers. Using bioinformatics techniques, they discovered that a new gene, MSNP1AS, was located directly at the autism-associated genetic markers. They also found that expression levels of the gene were higher in brain samples from autism patients than in samples from healthy individuals. They also demonstrated that overexpression of MSNP1AS caused a decrease in moesin protein.
‘The autism genetic signal gave us a treasure map with a big X over the Mojave Desert,’ Campbell said. ‘Instead of searching in the bright lights of Las Vegas or Los Angeles, the nearest big cities, we decided to search right under the big X on the map. We discovered the treasure [MSNP1AS] in the desert, just where the map said it was. And, once we found the treasure, we realised that it was a key to a mansion in Paris – that MSNP1AS regulates expression of moesin, a protein that is generated by a gene on the X chromosome [a different continent] and is known to impact both brain development and immune response.’
Previous studies showed that moesin RNA was central to a network of genes with altered expression in postmortem brain samples from people with autism. Like the previous studies, Campbell and his colleagues found that moesin RNA levels were increased in those brain samples, while actual moesin protein levels were not.
‘This suggests that MSNP1AS RNA may play a role in suppressing moesin protein expression, which may increase the risk for autism,’ said Tara Kerin, the study’s lead author and a Ph.D. candidate in preventive medicine at the Keck School.
While their results hinted that both MSNP1AS and moesin potentially could be targets for therapy, there is simply too much information that remains a mystery.
‘This is just a first step,’ Kerin said. ‘It’s just another clue that may help unlock the puzzle that we have before us.’ Keck School of Medicine