World’s first bedside genetic test endorsed

Developed in Canada and conducted by researchers from the University of Ottawa Heart Institute, in partnership with Spartan Bioscience, the world’s first bedside genetic test has received acknowledgment by The Lancet. The article entitled ‘Point-of-care genetic testing for personalisation of antiplatelet treatment (RAPID GENE): a prospective, randomised, proof-of-concept trial’ reports on the use of a simple cheek swab test, the Spartan RX CYP2C19, performed by nurses at the patient’s bedside. This revolutionary technology allows patients with the genetic variant CYP2C19*2 to be rapidly identified. Cardiac stent patients with this variant are at risk of reacting poorly to standard anti-platelet therapy with Plavix (clopidogrel).
The study demonstrated that tailored drug treatment therapy made possible by genetic testing successfully protected all of the patients with the at-risk genetic variant from subsequent adverse events, while 30 per cent of patients treated with standard therapy did not receive adequate protection. The test is a significant step towards the realisation of personalised medicine.

http://tinyurl.com/cu8ruhu

Towards TB elimination: ECDC and ERS introduce new guidelines on tuberculosis care in Europe

The European Respiratory Society (ERS) and the European Centre for Disease Prevention and Control (ECDC) have published their jointly developed European Union Standards for Tuberculosis Care (ESTC). The 21 patient-centred standards aim to guide healthcare workers to ensure optimal diagnosis, treatment and prevention of TB in Europe – with nearly 74,000 reported TB cases in the EU/EEA in 2010 clearly showing that TB remains a public health challenge across the region. The new EU-specific guidelines were developed by a panel of 30 experts and aim to bridge current gaps in the case management of TB that were identified in a recent survey. In the process, the ERS has taken the lead in developing the clinically related standards and ECDC has developed the public health related standards. The ESTC are based on the same recommendations as the International Standards for TB Care (ISTC), but feature additional supplements and replacement information relevant for healthcare providers in the EU. The new guidelines include the following: All people showing signs, symptoms, history or risk factors linked with TB should be examined for TB. All people diagnosed with TB should undergo drug susceptibility testing in a laboratory setting, to rule out drug-resistance and help combat the growing number of multidrug-resistant cases of TB (MDR-TB). Patients with, or highly likely to have, TB caused by drug-resistant organisms (especially MDR-TB) should be treated for at least 20 months, with the recommended intensive phase of treatment being 8 months. It should be ensured that all newly admitted patients who are suspected of having infectious TB are subject to respiratory isolation until their diagnosis is confirmed or excluded following an appropriate infection control plan. The guidelines also include an additional section on how policymakers and healthcare professionals can adopt and introduce the recommendations to a healthcare setting.

http://tinyurl.com/d88ylrc

Climate model to predict malaria outbreaks in India

Scientists from the University of Liverpool’s School of Environmental Sciences are working with computer modelling specialists from C-MMACS in India to predict areas of the country that are at most risk of malaria outbreaks, following changes in monsoon rainfall. The number of heavy rainfall events in India has increased over the past 50 years, but research has tended to focus on the impact this has on agriculture rather than the vector-borne diseases, such as malaria and Japanese encephalitis. The model could help inform early intervention methods to prevent the spread of malaria at key points in the seasonal monsoon cycle, reducing the economic and health impacts of the disease. It is already known that an anomalous season of heavy rainfall, when heat and humidity are high, allows mosquitoes to thrive and spread infection to humans. In order to prepare health services and prevent epidemics there is need for a way of predicting when these events are likely to occur in areas that are not accustomed to annual outbreaks of malaria. C-MMACS is rapidly developing its computer modelling capabilities using technology that can address the impacts of climate variability on agriculture and water systems. This knowledge, together with the Liverpool models of vector-borne diseases, will help develop systems to predict when changes in the monsoonal rain may occur and which areas are most likely to see an increase in malaria.

http://tinyurl.com/cscnsro

Selecting IVF embryos for normal numbers of chromosomes can significantly increase pregnancy rates

BlueGnome is pleased to announce the results of the first randomised prospective IVF study of pre-implantation chromosome analysis using their 24sure array platform. The study by Yang et al (Pacific Reproductive Center,Torrance, USA) has demonstrated that selectively implanting euploid embryos, with a normal number of chromosomes, significantly increases pregnancy rates.
The study blindly randomised 103 IVF cycles. In the treatment group of 55 cycles, 24sure analysis of day 5 biopsies was used to selectively implant a single euploid embryo (as recommended by IVF regulatory bodies such as the HEFA), while in the control group of 48 cycles single embryos were selected using existing morphological scorecard approaches. The ongoing pregnancy rate, after 20 weeks, per cycle started was 69.1% in the 24sure treatment group vs 41.7% in the control group. This extremely promising result provides direct evidence that 24sure analysis can deliver a 65% increase in pregnancy rates, even in younger patients with more favourable IVF outcomes. Further randomised studies are needed and are underway.
‘This study provides crucial evidence that 24 chromosome aneuploidy screening, using 24sure, can offer a dramatic benefit to IVF success rates. While further studies are still needed, this result is incredibly exciting because it indicates for the first time that 24 chromosome screening and single embryo transfer has the potential to become the default standard of care for all IVF cycles worldwide.’ Nick Haan, CEO, BlueGnome Ltd, BlueGnome

A single stem cell mutation triggers fibroid tumours

Fibroid uterine tumours affect an estimated 15 million women in the United States, causing irregular bleeding, anaemia, pain, and infertility. Despite the high prevalence of the tumours, which occur in 60 percent of women by age 45, the molecular cause has been unknown.
New Northwestern Medicine pre-clinical research has for the first time identified the molecular trigger of the tumour — a single stem cell that develops a mutation, starts to grow uncontrollably and activates other cells to join its frenzied expansion.
‘It loses its way and goes wild,’ said Serdar Bulun, MD, the chair of obstetrics and gynaecology at Northwestern University Feinberg School of Medicine and Northwestern Memorial Hospital. ‘No one knew how these came about before. The stem cells make up only 1.5 percent of the cells in the tumour, yet they are the essential drivers of its growth.’
The stem cell initiating the tumour carries a mutation called MED12. Recently, mutations in the MED12 gene have been reported in the majority of uterine fibroid tissues. Once the mutation kicks off the abnormal expansion, the tumours grow in response to steroid hormones, particularly progesterone.
For the study, researchers examined the behaviour of human fibroid stem cells when grafted into a mouse, a novel model initiated by Northwestern scientist Takeshi Kurita, PhD, a research associate professor of obstetrics and gynaecology. The most important characteristic of fibroid stem cells is their ability to generate tumours. Tumours originating from the fibroid stem cell population grew 10 times larger compared to tumours initiated with the main cell population, suggesting a key role of these tumour stem cells is to initiate and sustain tumour growth.
‘Understanding how this mutation directs the tumor growth gives us a new direction to develop therapies,’ said Bulun, also the George H. Gardner Professor of Clinical Gynecology. University Feinberg School of Medicine

Low levels of testosterone in men could increase their risk of developing diabetes.

The study is the first to directly show how low testosterone levels in fat tissue can be instrumental in the onset of Type 2 diabetes.
Testosterone is present throughout the body. Low testosterone levels are linked to obesity, a known risk factor for diabetes. It acts on fat cells through molecules known as androgen receptors. These enable the testosterone to activate genes linked to obesity and diabetes.
The research showed that mice in which the function of testosterone in fat tissue was impaired were more likely to be insulin resistant than mice in which the role of testosterone was not hindered.
As men age their testosterone levels lower. This, along with increasing obesity, will increase the incidence of diabetes.
The findings from the University of Edinburgh could also help explain why older men are more at risk of developing diabetes, because testosterone levels fall in men as they age.
It showed that mice, which did not have androgen receptors in fat tissue for testosterone to attach to, were more likely to show signs of insulin resistance than other mice.
Researchers found that mice without androgen receptors in fat tissue also became fatter than other mice and developed full insulin resistance when both types were fed a high-fat diet.
The study showed that insulin resistance occurred in mice when the function of testosterone was impaired regardless of body weight.
Scientists believe that a protein called RBP4 plays a crucial role in regulating insulin resistance when testosterone is impaired. They found that levels of RBP4 were higher in mice in which the role of testosterone was impaired. The Edinburgh team say that its findings could lead to the development of new treatments that regulate production of RBP4. This could reduce the risk of diabetes in men with lower levels of testosterone.
Researchers are now planning to study patients with Type-2 diabetes to see if their levels of testosterone correlate with levels of RBP 4.
‘We already know that low testosterone levels are associated with increased obesity and therefore with increased risk of developing Type 2 diabetes, but this study provides evidence that there can be increased risk even when body mass is not affected. Yet while testosterone-impaired mice developed insulin resistance whatever diet they were given, the effect was considerably more pronounced on those fed on a high fat diet. This reinforces Diabetes UK advice that a healthy balanced diet is important for everyone and particularly for those already at high risk of developing Type 2 diabetes.’ says Dr Iain Frame, Director of Research at Diabetes UK. University of Edinburgh

microRNA controls malignancy and resistance of breast cancer cells

Resistances to drugs are the main reason why breast cancer cannot effectively be fought in many patients. Scientists from the German Cancer Research Center (Deutsches Krebsforschungszentrum, DKFZ) have now succeeded in restoring the sensitivity of resistant breast cancer cells to tamoxifen using a tiny RNA molecule. These snippets of RNA repress production of a protein that enhances cancer growth. In tissue samples of breast tumours, the investigators found clues that they also play a clinically relevant role.
Many breast cancer patients are treated with a drug called tamoxifen. The substance blocks the effect of oestrogen and thus suppresses the growth signals of this hormone in cancer cells. When resistance to the drug develops, tumour cells change their growth program: They change their behaviour and shape, become more mobile and also adopt the ability to invade surrounding tissue. Scientists working with PD (Associate Professor) Dr. Stefan Wiemann of the German Cancer Research Center (DKFZ) have now also observed these changes in tamoxifen resistant breast cancer cells.
‘Resistances to drugs are the main reason why therapies fail and disease progresses in many cancers,’ Wiemann explains. ‘We want to understand what goes on in the cells when this happens so we can develop better therapies in the future.’ Wiemann’s co-worker, Dr. Özgür Sahin, suspects that tiny pieces of RNA known as microRNAs play a role in resistance development. ‘These minuscule RNA snippets control many cellular processes by attaching themselves to target gene transcripts and thus repressing protein production.’
By treating breast cancer cells in vitro with regular doses of tamoxifen, Sahin’s team induced resistance of these cells to the drug. As resistance developed, the cancer cells switched to the development program that makes them grow even more invasively and more malignantly. Checking the complete spectrum of microRNAs in the resistant tumour cells, the investigators noticed that production of microRNA 375 was more strongly reduced than others. When they boosted the production of microRNA 375, the cells started responding again to tamoxifen and switched back to their normal growth program. ‘This strongly suggests that a lack of microRNA 375 both increases malignancy and contributes to resistance development,’ says Özgür Sahin.
If microRNA 375 levels are low, breast cancer cells increase the production of metadherin. Apparently, microRNA 375 suppresses the production of this cancer-promoting protein in healthy cells. In patients receiving tamoxifen therapy the team found that high metadherin levels in the cancer cells go along with a high risk of recurrence. This suggests that microRNA 375 and metadherin are involved in the development of resistance to tamoxifen.
‘The analysis of microRNAs in breast cancer has put us on the track of metadherin. We will possibly be able to specifically influence the cancer-promoting properties of this protein in the future,’ says Wiemann describing the goal of further research. The German Cancer Research Center (Deutsches Krebsforschungszentrum, DKFZ)

Study suggests new approach to explain cancer growth: low oxygen levels

Low oxygen levels in cells may be a primary cause of uncontrollable tumour growth in some cancers, according to a new University of Georgia study. The authors’ findings run counter to widely accepted beliefs that genetic mutations are responsible for cancer growth.
If hypoxia, or low oxygen levels in cells, is proven to be a key driver of certain types of cancer, treatment plans for curing the malignant growth could change in significant ways, said Ying Xu, Regents-Georgia Research Alliance Eminent Scholar and professor of bioinformatics and computational biology in the Franklin College of Arts and Sciences.
The research team analysed samples of messenger RNA data-also called transcriptomic data-from seven different cancer types in a publicly available database. They found that long-term lack of oxygen in cells may be a key driver of cancer growth.
Previous studies have linked low oxygen levels in cells as a contributing factor in cancer development, but not as the driving force for cancer growth. High incidence rates of cancer around the world cannot be explained by chance genetic mutations alone, Xu said. He added that bioinformatics, which melds biology and computational science, has allowed researchers to see cancer in a new light. Gene-level mutations may give cancer cells a competitive edge over healthy cells, but the proposed new cancer growth model does not require the presence of common malfunctions such as a sudden proliferation of oncogenes, precursors to cancer cells.
‘Cancer drugs try to get to the root-at the molecular level-of a particular mutation, but the cancer often bypasses it,’ Xu said. ‘So we think that possibly genetic mutations may not be the main driver of cancer.’
Much of cancer research so far has focused on designing drug treatments that counteract genetic mutations associated with a particular type of cancer. In their study, the researchers analysed data downloaded from the Stanford Microarray Database via a software program to detect abnormal gene expression patterns in seven cancers: breast, kidney, liver, lung, ovary, pancreatic and stomach. The online database allows scientists to examine information from microarray chips, which are small glass slides containing large amounts of gene material.
Xu relied on the gene HIF1A as a biomarker of the amount of molecular oxygen in a cell. All seven cancers showed increasing amounts of HIF1A, indicating decreasing oxygen levels in the cancer cells.
Low oxygen levels in a cell interrupt the activity of oxidative phosphorylation, a term for the highly efficient way that cells normally use to convert food to energy. As oxygen decreases, the cells switch to glycolysis to produce their energy units, called ATP. Glycolysis is a drastically less efficient way to obtain energy, and so the cancer cells must work even harder to obtain even more food, specifically glucose, to survive. When oxygen levels dip dangerously low, angiogenesis, or the process of creating new blood vessels, begins. The new blood vessels provide fresh oxygen, thus improving oxygen levels in the cell and tumour and slowing the cancer growth-but only temporarily.
‘When a cancer cell gets more food, it grows; this makes the tumour biomass bigger and even more hypoxic. In turn, the energy-conversion efficiency goes further down, making the cells even more hungry and triggering the cells to get more food from blood circulation, creating a vicious cycle. This could be a key driver of cancer,’ Xu said.
Xu explained that this new cancer-growth model could help explain why many cancers become drug resistant so quickly-often within three to six months. He stressed the importance of testing the new model through future experimental cancer research. If the model holds, researchers will need to search for methods to prevent hypoxia in cells in the first place, which could result in a sea change in cancer treatment. University of Georgia

Study identifies key cellular mechanisms behind the onset of tinnitus

Researchers in the University of Leicester’s Department of Cell Physiology and Pharmacology have identified a cellular mechanism that could underlie the development of tinnitus following exposure to loud noises. The discovery could lead to novel tinnitus treatments, and investigations into potential drugs to prevent tinnitus are currently underway.
Tinnitus is a sensation of phantom sounds, usually ringing or buzzing, heard in the ears when no external noise is present. It commonly develops after exposure to loud noises (acoustic over-exposure), and scientists have speculated that it results from damage to nerve cells connected to the ears.
Although hearing loss and tinnitus affect around ten percent of the population, there are currently no drugs available to treat or prevent tinnitus.
University of Leicester researcher Dr Martine Hamann, who led the study said: ‘We need to know the implications of acoustic over exposure, not only in terms of hearing loss but also what’s happening in the brain and central nervous system. It’s believed that tinnitus results from changes in excitability in cells in the brain – cells become more reactive, in this case more reactive to an unknown sound.’
Dr Hamann and her team, including PhD student Nadia Pilati, looked at cells in an area of the brain called the dorsal cochlear nucleus – the relay carrying signals from nerve cells in the ear to the parts of the brain that decode and make sense of sounds. Following exposure to loud noises, some of the nerve cells (neurons) in the dorsal cochlear nucleus start to fire erratically, and this uncontrolled activity eventually leads to tinnitus.
Dr Hamann said ‘We showed that exposure to loud sound triggers hearing loss a few days after the exposure to the sound. It also triggers this uncontrolled activity in the neurons of the dorsal cochlear nucleus. This is all happening very quickly, in a matter of days’
In a key breakthrough in collaboration with GSK who sponsored Dr Pilati’s PhD, the team also discovered the specific cellular mechanism that leads to the neurons’ over-activity. Malfunctions in specific potassium channels that help regulate the nerve cell’s electrical activity mean the neurons cannot return to an equilibrium resting state.
Ordinarily, these cells only fire regularly and therefore regularly return to a rest state. However, if the potassium channels are not working properly, the cells cannot return to a rest state and instead fire continuously in random bursts, creating the sensation of constant noise when none exists.
Dr Hamann explained: ‘In normal conditions the channel helps to drag down the cellular electrical activity to its resting state and this allows the cell to function with a regular pattern. After exposure to loud sound, the channel is functioning less and therefore the cell is constantly active, being unable to reach its resting state and displaying those irregular bursts.’
Although many researchers have investigated the mechanisms underlying tinnitus, this is the first time that cellular bursting activity has been characterised and linked to specific potassium channels. Identifying the potassium channels involved in the early stages of tinnitus opens up new possibilities for preventing tinnitus with early drug treatments.
Dr Hamann’s team is currently investigating potential drugs that could regulate the damaged cells, preventing their erratic firing and returning them to a resting state. If suitable drug compounds are discovered, they could be given to patients who have been exposed to loud noises to protect them against the onset of tinnitus. University of Leicester

NHS CSP approved HPV assay helps laboratories in England to be ready for HPV triage roll-out

As the NHS cervical cancer screening programme (CSP) rolls out high risk human papilloma virus (HR-HPV) testing for the triage of women with borderline or low-grade cervical abnormalities across England, the Roche cobas HPV test has already enabled more than 30 laboratories to be ready to offer an HPV testing service.

In the financial year 2011/2012, local cervical screening programmes have been preparing to present a business case for approval and central support funding (for the first two years) to support the implementation of HPV Triage and Test of Cure.  Only programmes with a minimum annual workload of 35,000 can apply and the HPV assay used must be approved by NHS CSP [1].  Currently, only five commercially available HPV tests have been approved, including the cobas® HPV test on the cobas 4800 instrument [2]. 

The fully automated cobas® HPV Test is ideal for screening large numbers of samples for HR-HPV.  Unlike other HPV assays, this is an FDA approved and CE marked test that provides a separate result for the highest risk HPV genotypes (HPV 16 and HPV 18) in addition to a pooled result for all HR-HPV genotypes.  This separate simultaneous detection of HPV 16 and HPV 18 further enhances risk stratification, allowing women who may need more intensive follow up and intervention to be identified.  The cobas® HPV Test is also the only integrated genotyping test to have undergone full clinical validation [3].

It was anticipated that 10-20 laboratories would be NHS CSP approved by 1st April 2012, from a mixture of cytology, microbiology and virology departments [2].  This diversity of disciplines is reflected in the range of laboratories that have adopted the cobas® HPV test.

Successful bids are required to have adequate access to molecular and HPV expertise, and to maintain the operating standard of 14 day turnaround time for cervical screening.  Additional criteria for local screening programmes, set by the Department of Health and NHS CSP, include: having sufficient sustainable colposcopy capacity to cope with initial increased workloads; adopting an external quality assurance programme for HPV testing; having suitable training for local professionals; appointing a pathway manager to oversee all aspects; and having quality assurance and primary care support for the bid.  The full list of criteria is published in the NHS CSP Implementation Guide (2011) [1].

www.roche.co.uk

References

  1. NHS Cancer Screening Programmes (2011) NHS CSP Good Practice Guide Number 3.  HPV Triage and Test of Cure: Draft Implementation Guide (July, 2011).
  2.  The UK Clinical Virology Network (2011) Roll-out of HPV triage in the NHS. 1 December 2011 (updated on 14 Feb 2012)
  3. Stoler, MH, Wright TC, Sharma A et al (2011) High risk Human Papillomavirus Testing in Women with ASC-US Cytology. Results from the ATHENA HPV Study. Am J Clin Pathol 135:468-475.