EKF Diagnostics’ Quo-Lab HbA1c analyser secures IFCC certification

The Quo-Lab HbA1c point-of-care analyser has successfully achieved International Federation of Clinical Chemistry and Laboratory Medicine (IFCC) certification. The IFCC maintains the JCTLM (Joint Committee for Traceability in Laboratory Medicine) endorsed reference measurement procedure for HbA1c, accepted worldwide as the analytical control for traceability of HbA1c measurement. To participate in the programme manufacturers are required to register and report the results of 24 samples (two per month) from across the measurement range. The samples are supplied by an IFCC Reference Laboratory. Together with the existing NGSP certification achieved from 2012, the IFCC award demonstrates that Quo-Lab meets all of the demanding standards set by independent certifying bodies.  

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Faulty gene can delay or block puberty

Scientists from Queen Mary University of London have identified a new gene that may influence the timing of puberty, according to new research. More than 4% of adolescents suffer from early or late-onset puberty, which is associated with health problems including obesity, type-2 diabetes, heart disease and cancer. The findings of the study will make diagnosis easier and more efficient, reducing the risk of disease.
Researchers scanned the genomes of seven families experiencing delayed puberty. Their genetic profiles were analysed to identify specific genes that were different in these families, compared to individuals who started puberty normally. The researchers identified 15 candidate genes which were then examined in a further 288 individuals with late-onset puberty.
One gene was found to have common variants in nine families. The gene appears to contribute to the early development of gonadotropin-releasing hormone (GnRH) neurons in the brain. At puberty, a surge of GnRH is released, signalling to the pituitary gland to release further hormones that act on the ovaries and testes, triggering reproductive function (sexual maturation). If development of the GnRH neurons is delayed, the surge of GnRH that initiates these signals is also delayed.
Dr Sasha Howard, lead author and Clinical Research Fellow at Queen Mary University of London, comments: ‘Studies estimate the majority of variation in the timing of puberty is genetically determined, yet this is one of the first genes with major impact to be identified. This is an exciting finding as disturbed GnRH neuron development has never been linked to simple delayed puberty before, and may reveal a new biological pathway in the control of puberty timing.’
The group has also shown that the same gene may be responsible for completely blocking puberty – a condition known as hypogonadotrophic hypogonadism. Queen Mary University of London

MRI reveals genetic activity

Doctors commonly use magnetic resonance imaging (MRI) to diagnose tumours, damage from stroke, and many other medical conditions. Neuroscientists also rely on it as a research tool for identifying parts of the brain that carry out different cognitive functions.

Now, a team of biological engineers at MIT is trying to adapt MRI to a much smaller scale, allowing researchers to visualise gene activity inside the brains of living animals. Tracking these genes with MRI would enable scientists to learn more about how the genes control processes such as forming memories and learning new skills, says Alan Jasanoff, an MIT associate professor of biological engineering and leader of the research team.

‘The dream of molecular imaging is to provide information about the biology of intact organisms, at the molecule level,’ says Jasanoff, who is also an associate member of MIT’s McGovern Institute for Brain Research. ‘The goal is to not have to chop up the brain, but instead to actually see things that are happening inside.’

To help reach that goal, Jasanoff and colleagues have developed a new way to image a ‘reporter gene’ — an artificial gene that turns on or off to signal events in the body, much like an indicator light on a car’s dashboard. In the new study, the reporter gene encodes an enzyme that interacts with a magnetic contrast agent injected into the brain, making the agent visible with MRI. This approach allows researchers to determine when and where that reporter gene is turned on.
MRI uses magnetic fields and radio waves that interact with protons in the body to produce detailed images of the body’s interior. In brain studies, neuroscientists commonly use functional MRI to measure blood flow, which reveals which parts of the brain are active during a particular task. When scanning other organs, doctors sometimes use magnetic ‘contrast agents’ to boost the visibility of certain tissues.

The new MIT approach includes a contrast agent called a manganese porphyrin and the new reporter gene, which codes for a genetically engineered enzyme that alters the electric charge on the contrast agent. Jasanoff and colleagues designed the contrast agent so that it is soluble in water and readily eliminated from the body, making it difficult to detect by MRI. However, when the engineered enzyme, known as SEAP, slices phosphate molecules from the manganese porphyrin, the contrast agent becomes insoluble and starts to accumulate in brain tissues, allowing it to be seen.

The natural version of SEAP is found in the placenta, but not in other tissues. By injecting a virus carrying the SEAP gene into the brain cells of mice, the researchers were able to incorporate the gene into the cells’ own genome. Brain cells then started producing the SEAP protein, which is secreted from the cells and can be anchored to their outer surfaces. That’s important, Jasanoff says, because it means that the contrast agent doesn’t have to penetrate the cells to interact with the enzyme.

Researchers can then find out where SEAP is active by injecting the MRI contrast agent, which spreads throughout the brain but accumulates only near cells producing the SEAP protein.
In this study, which was designed to test this general approach, the detection system revealed only whether the SEAP gene had been successfully incorporated into brain cells. However, in future studies, the researchers intend to engineer the SEAP gene so it is only active when a particular gene of interest is turned on.

Jasanoff first plans to link the SEAP gene with so-called ‘early immediate genes,’ which are necessary for brain plasticity — the weakening and strengthening of connections between neurons, which is essential to learning and memory.

‘As people who are interested in brain function, the top questions we want to address are about how brain function changes patterns of gene expression in the brain,’ Jasanoff says. ‘We also imagine a future where we might turn the reporter enzyme on and off when it binds to neurotransmitters, so we can detect changes in neurotransmitter levels as well.’ MIT

Blood test may help predict whether a child will become obese

Scientists have found that a simple blood test, which can read DNA, could be used to predict obesity levels in children.
Researchers at the Universities of Southampton, Exeter and Plymouth used the test to assess the levels of epigenetic switches in the PGC1a gene – a gene that regulates fat storage in the body.
Epigenetic switches take place through a chemical change called DNA methylation which controls how genes work and is set during early life.
The Southampton team found that the test, when carried out on children at five years old, differentiates between children with a high body fat and those with a low body fat when they were older. Results showed that a rise in DNA methylation levels of 10 per cent at five years was associated with up to 12 per cent more body fat at 14 years. Results were independent of the child’s gender, their amount of physical activity and their timing of puberty.
Dr Graham Burdge, of the University of Southampton who led the study with colleague Dr Karen Lillycrop, comments: ‘It can be difficult to predict when children are very young, which children will put on weight or become obese. It is important to know which children are at risk because help, such as suggestions about their diet, can be offered early and before they start to gain weight.
‘The results of our study provide further evidence that being overweight or obese in childhood is not just due to lifestyle, but may also involve important basic processes that control our genes. We hope that this knowledge will help us to develop and test new ways to prevent children developing obesity which can be introduced before a child starts to gain excess weight. However, our findings now need to be tested in larger groups of children.’
The researchers used DNA samples from 40 children who took part in the EarlyBird project, which studied 300 children in Plymouth from the age of five until they were 14 years old.
Led by Professor Wilkin, the study assessed the children in Plymouth each year for factors related to type 2 diabetes, such as the amount of exercise they undertook and the amount of fat in their body. A blood sample was collected and stored. The Southampton team extracted DNA from these blood samples to test for epigenetic switches.
Professor Wilkin says: ‘The EarlyBird study has already provided important information about the causes of obesity in children. Now samples stored during the study have provided clues about the role of fundamental processes that affect how genes work, over which a child has no control. This has shown that these mechanisms can affect their health during childhood and as adults.’ University of Southampton

A non-invasive, rapid screening method for Alzheimer’s disease

The apolipoprotein E gene ε4 allele is considered a negative factor for neural regeneration in late-onset Alzheimer’s disease cases. Apolipoprotein E genotyping is crucial to apolipoprotein E polymorphism analysis. Peripheral venous blood is the conventional tissue source for apolipoprotein E genotyping polymorphism analysis. Blood yields high-quality genomic DNA and can meet various research purposes. However, because of invasiveness, taking blood samples decreases compliance among the elderly, especially neuropsychiatric patients. Moreover, blood specimens often need cold storage, thereby increasing the cost. A research team from Department of Neurology, Peking University Shenzhen Hospital in China pointed out a non-invasive and fast method to genotype large samples to help to elucidate the role of apolipoprotein E gene ε4 allele in neural regeneration in the cases with late-onset Alzheimer’s disease. Genomic DNA from mouth swab specimens was extracted using magnetic nanoparticles, and genotyping was performed by real-time PCR using TaqMan-BHQ probes. Genotyping accuracy was validated by DNA sequencing. The method developed for apolipoprotein E genotyping is accurate and reliable, and also suitable for genotyping large samples, which may help determine the role of the apolipoprotein E ε4 allele in neural regeneration in late-onset Alzheimer’s disease cases.

EurekAlert

Genetic-based testing and treatment for breast cancer

Dartmouth researchers at its Norris Cotton Cancer Center have compiled a review of the role that information gathered through genetic testing plays in the diagnosis and treatment of breast cancer.

Genomic testing is changing the way breast cancer is diagnosed and treated. By examining a woman’s genes to look for specific mutations or biomarkers, treatment can be personalised to the tumour cell’s biology and a woman’s genetics.

‘A personalised approach increases the precision and success of breast cancer treatment,’ said Gregory Tsongalis, PhD, director of Molecular Pathology at Norris Cotton Cancer Center and lead author of the paper. ‘Molecular profiling exposes a tumour’s Achilles’ heel. We can see what messages the tumour cells are receiving and sending. It is a biological intelligence gathering mission in an attempt to interrupt the disease.

According to Tsongalis large scale genetic testing of breast cancer is not yet part of routine clinical care as it is with lung and colon cancers, even though he and his team run a genetics laboratory for routine cancer care. Genetic testing according to Tsongalis is a powerful weapon in the diagnosis and treatment of breast cancer.

With results from the genetic testing of a tumour cell’s biology, clinicians categorise breast cancer in ways that allow them to select the most effective treatments. Based on genetic biomarkers, there are three categories of breast cancer:
1. ER-positive breast cancer needs hormones, such as oestrogen to grow. Oestrogen fuels cancer cell growth, stops cancer cells from dying, and helps the cells lay down roots to maintain blood supply for tumours. ER-positive cancers are less aggressive and often treated with drugs that are selective estrogen receptor modulators (SERM).
2. HER2 –positive breast cancer cells contain large amounts of protein that help them grow and multiply. Medications turn off the production of protein to stop tumour growth and kill cancer cells.
3. Triple negative (ER-negative/PR-negative/HER2-negative) breast cancer is the most aggressive type and has the poorest clinical outcome. There is no approved personalised therapy for triple negative, but research has identified six subtypes of tumours. This is the first step in identifying biomarkers that can lead to the development of personalised treatments.

‘Genomic testing of breast cancer has expanded our understanding of the disease process and has proven more effective than traditional laboratory tests,’ said Tsongalis. ‘At NCCC all of our breast cancer patients are tested for abnormal copies of the HER2 gene using specially designed DNA probes. New biomarkers and the reclassification of cancers based on these biomarkers has led to the development of new, effective treatments that can be personalised to an individual breast cancer patient.’ Norris Cotton Cancer Center

Gene may predict if further cancer treatments are needed

UT Southwestern Medical Center researchers are developing a new predictive tool that could help patients with breast cancer and certain lung cancers decide whether follow-up treatments are likely to help.
Dr. Jerry Shay, Vice Chairman and Professor of Cell Biology at UT Southwestern, led a three-year study on the effects of irradiation in a lung cancer-susceptible mouse model. When his team looked at gene expression changes in the mice, then applied them to humans with early stage cancer, the results revealed a breakdown of which patients have a high or low chance of survival.

The findings offer insight into helping patients assess treatment risk. Radiation therapy and chemotherapy that can destroy tumours also can damage surrounding healthy tissue. So with an appropriate test, patients could avoid getting additional radiation or chemotherapy treatment they may not need, Dr. Shay said.

‘This finding could be relevant to the many thousands of individuals affected by these cancers and could prevent unnecessary therapy,’ said Dr. Shay, Associate Director for Education and Training for the Harold C. Simmons Comprehensive Cancer Center at UT Southwestern. ‘We’re trying to find better prognostic indicators of outcomes so that only patients who will benefit from additional therapy receive it.’

Dr. Shay’s study closely monitored lung cancer development in mice after irradiation. His group found some types of irradiation resulted in an increase in invasive, more malignant tumours. He examined the gene expression changes in mice well before some of them developed advanced cancers. The genes in the mouse that correlated with poor outcomes were then matched with human genes. When Dr. Shay’s team compared the predictive signatures from the mice with more than 700 human cancer patient signatures, the overall survivability of the patients correlated with his predictive signature in the mice. Thus, the classifier that predicted invasive cancer in mice also predicted poor outcomes in humans.

His study looked at adenocarcinoma, a type of lung cancer in the air sacks that afflicts both smokers and non-smokers. The findings also predicted overall survival in patients with early-stage breast cancer and thus offer the same helpful information to breast cancer patients; however the genes were not predictive of another type of lung cancer, called squamous cell carcinoma. Other types of cancers have yet to be tested.

UT Southwestern Medical Center

Chemistry team develops world’s first fluorescent date-rape drug sensor

When the sensor, GHB Orange, is added to a drink that has been spiked with GHB, the sensor’s fluorescent colour loses its intensity
Club-goers will soon be able to detect within 30 seconds if their drinks have been spiked, with the world’s first GHB fluorescent sensor developed by NUS researchers. GHB or Gamma-Hydroxybutyric acid is a central nervous system depressant, which has been used in medical settings as a general anaesthetic. Today, it is most commonly used as a date-rape drug, which renders victims incapacitated and vulnerable to sexual assault. The breakthrough method to detect the presence of GHB contributes therefore towards the prevention of drug-facilitated sexual assault.

‘We wanted to develop something that would give results within several seconds, so you can check whether it is a safe drink or whether you should stop and think again,’ said NUS Chemistry Professor Chang Young-Tae, who supervised the team that discovered the sensor. His team members, also from the NUS Department of Chemistry, were Research Fellow Dr Zhai Duanting, PhD candidate Mr Xu Wang and recent graduate Mr Elton Tan.

As GHB is odourless, colourless and slightly salty, it is almost undetectable when mixed in a drink, thus making it desirable to sexual predators. A small amount of between two to four grams of GHB will interfere with the motor and speech control of a person, and may even induce coma-like sleep. GHB takes effect within 15 to 30 minutes, and the effect can last for three to six hours. It is only detectable in a person’s urine six to 12 hours after ingestion.

This sensor, which can detect GHB at concentrations of 10 mg/ml and higher, is a better detector than existing methods because of its high sensitivity, fast response time and technical simplicity. According to Prof Chang, the colorimetric method of testing is not as sensitive as GHB Orange, and the chromatography test is expensive to produce and may take as long as 20 minutes.

When the sensor, GHB Orange, is added to a drink that has been spiked with GHB, the sensor’s fluorescent colour loses its intensity. This loss in intensity is observed as a change from orange to clear if the drink is translucent or light-coloured, or to a colour with a shorter wavelength such as blue or green, depending on how the fluorescent orange colour combines with the drink’s original colour. This change is best observed under green light, but is also observable under other kinds of lighting.

Prof Chang and his team, who are working with product designers and fabricators, intend to come up with a portable detection kit within a year. One of the product scenarios includes that of using a cell phone as a reader since some phones come with a flashlight function that can be used to irradiate the sensor. The team believes that it can market a kit of 10 tests for S$1. National University of Singapore

Mechanical forces driving breast cancer lead to key molecular discovery

UCSF scientists say new finding could lead to more accurate prognosis
The stiffening of breast tissue in breast-cancer development points to a new way to distinguish a type of breast cancer with a poor prognosis from a related, but often less deadly type, UC San Francisco researchers have found in a new study.
The findings may lead eventually to new treatment focused not only on molecular targets within cancerous cells, but also on mechanical properties of surrounding tissue, the researchers said.
In a mouse model of breast cancer, scientists led by Valerie Weaver, PhD, professor of surgery and anatomy and director of the Center for Bioengineering and Tissue Regeneration at UCSF, identified a biochemical chain of events leading to tumour progression. Significantly, this chain of events was triggered by stiffening of scaffolding tissue in the microscopic environment surrounding pre-cancerous cells. The stiffening led to the production of a molecule that can be measured in human breast cancer tissue, and which the researchers found was associated with worse clinical outcomes.
‘This discovery of the molecular chain of events between tissue stiffening and spreading cancer may lead to new and more effective treatment strategies that target structural changes in breast cancers and other tumours,’ Weaver said.
In the mouse experiments, Janna Mouw, PhD, a UCSF associate specialist who works in Weaver’s lab, found that tissue stiffening in microscopic scaffolding known as the extracellular matrix, or ECM, increases signalling by ECM-associated molecules, called integrins. The integrins in turn trigger a signalling cascade within cells that leads to the production of a tumour-promoting molecule called miR-18a.
Unlike most cellular signalling molecules thus far studied by scientists, miR-18a is not a protein or a hormone, but rather a microRNA, another type of molecule recognised in recent years to play an important role in the lives of cells. The miR-18a dials down the levels of a protective, tumour-suppressing protein called PTEN, which often is disabled in cancerous cells, leading to abnormal biochemical signalling that can promote cancer growth. University of California – San Francisco

Biomarkers predict effectiveness of radiation treatments for head and neck cancer

An international team of researchers, led by Beaumont Health System’s Jan Akervall, M.D., Ph.D., looked at biomarkers to determine the effectiveness of radiation treatments for patients with squamous cell cancer of the head and neck. They identified two markers that were good at predicting a patient’s resistance to radiation therapy.
Explains Dr. Akervall, co-director, Head and Neck Cancer Multidisciplinary Clinic, Beaumont Hospital, Royal Oak, and clinical director of Beaumont’s BioBank, ‘Radiation therapy is a common treatment for people with squamous cell cancer of the head and neck. However, it’s not always well-tolerated. It can take two months, resulting in lots of side effects. Some of these complications are permanent. Before my patient goes down that path, I really want to know if their tumours are going to respond to radiation. That’s where the patient’s biomarkers can shed some light. If not, we can look at other treatment options – saving time, possible risk for complications and expense.’

A biomarker is a gene or a set of genes or its products, RNA and proteins, that researchers use to predict a key clinical issue such as diagnosis, prognosis, and response to treatment, choice of treatment or recurrence. Biomarker studies can provide a bridge between emerging molecular information and clinical treatment. Biomarkers may also lead to personalised treatment, in contrast to protocol-based medicine of today.

‘Personalised treatment decisions based on biomarkers go beyond traditional cancer staging classifications. Individualised treatment plans could reduce morbidity and potentially improve survival by avoiding treatment failures,’ says Dr. Akervall. ‘There is reason to believe that a better understanding of the biological properties of these tumours, as measured in the patient’s pre-treatment biopsies, may lead us to predict the response to radiation therapy and concurrent chemoradiation, thus allowing for tailored patient-specific treatment strategies.’

The study followed two groups of patients. In the first group, researchers screened 18,000 genes and identified five distinct markers. The second group was larger and confirmed these findings and two of them in particular. Two markers were good at predicting whether or not radiation-based therapy would be effective.

Adds Dr. Akervall, ‘While our findings are encouraging, and a step toward personalised medicine, we hope to do more of this research with a larger, randomised trial.’ Beaumont Research Institute