Google Glass app for instant medical diagnostic test results

A team of researchers from UCLA’s Henry Samueli School of Engineering and Applied Science has developed a Google Glass application and a server platform that allow users of the wearable, glasses-like computer to perform instant, wireless diagnostic testing for a variety of diseases and health conditions.
With the new UCLA technology, Google Glass wearers can use the device’s hands-free camera to capture pictures of rapid diagnostic tests (RTDs), small strips on which blood or fluid samples are placed and which change colour to indicate the presence of HIV, malaria, prostate cancer or other conditions. Without relying on any additional devices, users can upload these images to a UCLA-designed server platform and receive accurate analyses — far more detailed than with the human eye — in as little as eight seconds.
The new technology could enhance the tracking of dangerous diseases and improve public health monitoring and rapid responses in disaster-relief areas or quarantine zones where conventional medical tools are not available or feasible, the researchers said.
‘This breakthrough technology takes advantage of gains in both immunochromatographic rapid diagnostic tests and wearable computers,’ said principal investigator Aydogan Ozcan, the Chancellor’s Professor of Electrical Engineering and Bioengineering at UCLA and associate director of UCLA’s California NanoSystems Institute. ‘This smart app allows for real-time tracking of health conditions and could be quite valuable in epidemiology, mobile health and telemedicine.’
In addition to designing the custom RDT–reader app for Google Glass, Ozcan’s team implemented server processes for fast and high-throughput evaluation of test results coming from multiple devices simultaneously. Finally, the researchers developed a web portal where users can view test results, maps charting the geographical spread of various diseases and conditions, and the cumulative data from all the tests they have submitted over time.
To submit images for test results, Google Glass users only need to take photos of RTD strips or other commonly available in-home tests, then upload the images wirelessly through the device to the UCLA-designed web portal. The technology permits quantified reading of the results to a few-parts-per-billion level of sensitivity — far greater than that of the naked eye — thus eliminating the potential for human error in interpreting results, which is a particular concern if the user is a health care worker who routinely deals with many different types of tests.
To gauge the accuracy and efficiency of the technology, the UCLA team used an in-home HIV test designed by OraSure Technologies and a prostate-specific antigen test made by JAJ International. The researchers took images of tests under normal, indoor, fluorescent-lit room conditions. They submitted more than 400 images of the two tests, and the RDT reader and server platform were able to read the images 99.6 percent of the time. In every case in which the technology successfully read the images, it returned accurate and quantified test results, according to the team.
The researchers also tested more than 300 blurry images or images of the testing device taken under various natural-usage scenarios and achieved a read rate of 96.6 percent. The UCLA Henry Samueli School of Engineering and Applied Science

Study identifies gene important to breast development and breast cancer

Significance: Understanding more about how the different types of cells in breast tissue develop improves our knowledge of breast cancer. TAZ represents a potential new target for drug therapies to treat aggressive types of breast cancer.

Background: In cancer, normal cells can become unpredictable or aggressive and thus difficult to treat with anti-cancer drugs. This is especially true in breast cancer. By identifying the genes responsible for this change in cells from breast tissue, researchers hope to identify a way to stop or reverse it.

In breast tissue, there are two main types of cells: luminal cells and basal cells. Normally luminal cells are ‘programmed’ by a particular class of proteins (transcription factors), which prevent them from becoming basal cells, and vice-versa.

Previous work led by Charlotte Kuperwasser, principal investigator, determined that some common forms of breast cancer originate from luminal cells while some rarer forms of breast cancer originate from basal cells.

Findings: The research team identified a gene, TAZ, which controls whether breast cells behave more like basal cells or more like luminal cells, information that might be important in understanding and potentially treating certain difficult-to-treat forms of breast cancer. TAZ helps to regulate how different genes operate in different cell types.

How the Study Was Conducted: The research team identified TAZ by testing the function of more than 1,000 genes to determine which were involved in ‘reprogramming’ luminal and basal cells, therefore reversing lineage commitment.

To further identify the role of TAZ, the research team studied breast tissue at different stages of development using two groups of mice: a control group with the TAZ gene and an experimental group of knock-out mice with the TAZ gene deleted. (Cells in breast tissue are renewed/developed during puberty, pregnancy, and nursing.)

The team also looked at the levels of the TAZ gene in tumours from women with either luminal or basal tumours.

Results: The research team found that the experimental group had an imbalance of cell populations in breast tissue: too many luminal and too few basal. The control group had a normal ratio of luminal to basal cells. In breast tissue from women with cancer, they found high levels of TAZ in basal but not luminal tumours.

Discussion: First author Adam Skibinski, M.D./Ph.D. student at Tufts University School of Medicine and the Sackler School of Graduate Biomedical Sciences at Tufts University:

‘We’ve known for a long time that breast cells can lose their normal identity when they become cancerous, but we are now realising that normal cells can change their characteristics as well in response to transcription factors like TAZ. This might be a factor in the development of breast cancer.’ Tufts University

Bone turnover markers predict prostate cancer outcomes

Biomarkers for bone formation and resorption predict outcomes for men with castration-resistant prostate cancer, a team of researchers from UC Davis and their collaborators have found. Their study also found that the markers identified a small group of patients who responded to the investigational drug atrasentan. The markers’ predictive ability could help clinicians match treatments with individual patients, track their effectiveness and affect clinical trial design.
Castration-resistant prostate cancer does not respond to hormone treatments and often metastasises to bone. This led researchers to wonder if increased bone turnover markers might predict the course of the disease.
‘We found that patients with high levels of these markers in the blood had a much shorter lifespan compared to patients with low levels,’ said lead author Primo Lara, associate director for translational research at the UC Davis Comprehensive Cancer Center. ‘By measuring bone turnover in prostate cancer patients, we can determine how well they do.’
Healthy bone maintains a balance between formation and resorption, generating new bone while recycling old. Prostate cancer throws off this balance. Researchers hoped this mechanism would help them track the cancer. To investigate this potential link, the team tested blood serum in 778 patients for both resorption (N-telopeptide, pyridinoline) and formation markers (C-terminal collagen propeptide, bone alkaline phosphatase) and found elevated levels of each of the markers predicted poor prognosis.
Perhaps most interesting, elevated marker levels also predicted whether patients would respond to a specific drug. About 6 percent of patients with the highest marker levels responded to atrasentan, and investigational drug abandoned because it failed in clinical trials. Lara and colleagues believe this may be related to study design.
‘Atrasentan kept coming up short in randomised trials because the drug only works for a small group,’ Lara said. ‘Because certain drugs only succeed in a fraction of patients, drug makers need to factor in these bone metabolism markers in their trial design. They need to target the patients most likely to benefit.’
In addition to determining which patients might respond best to a specific treatment, these markers could be used to track their response during treatment. Marker status could also stratify patients equally within different study arms. Balancing these studies could potentially make them more accurate and identify the niche value of drugs like atrasentan whose effectiveness is not evident in large populations.
‘I think the days of doing empirical studies on all comers should end,’ Lara said. ‘You need to have an appropriate database of patients and perform a rigorous analysis to find the subset who will benefit from an investigational drug.’ UC Davis Comprehensive Cancer Center

Findings on cause, progression of endometriosis

Changes to two previously unstudied genes are the centrepiece of a new theory regarding the cause and development of endometriosis, a chronic and painful disease affecting 1 in 10 women.

The discovery by Northwestern Medicine scientists suggests epigenetic modification, a process that enhances or disrupts how DNA is read, is an integral component of the disease and its progression. Matthew Dyson, PhD, research assistant professor of Obstetrics and Gynecology-Reproductive Biology Research and Serdar Bulun, MD, chair of Obstetrics and Gynecology also identified a novel role for a family of key gene regulators in the uterus.

‘Until now, the scientific community was looking for a genetic mutation to explain endometriosis,’ said Dr. Bulun, a member of the Center for Genetic Medicine and the Robert H. Lurie Comprehensive Cancer Center. ‘This is the first conclusive demonstration that the disease develops as a result of alterations in the epigenetic landscape and not from classical genetic mutations.’

Women develop endometriosis when cells from the lining of the uterus, usually shed during menstruation, grow in other areas of the body. The persistent survival of these cells results in chronic pelvic pain and infertility. Although the cause of the disease has remained unknown on a cellular level, there have been several different models established to explain its development.

Endometriosis only occurs in menstruating primates, suggesting that the unique evolution behind uterine development and menstruation are linked to the disease. Scientists consider retrograde menstruation – cells moving up the fallopian tubes and into the pelvis – as one probable cause.
Previous models, however, have been unable to explain why only 10 percent of women develop the disease when most experience retrograde menstruation at some point. Nor do they explain instances of endometriosis that arise independent of menstruation.

Bulun and Dyson propose that an epigenetic switch permits the expression of the transcription factor GATA6 rather than GATA2, resulting in progesterone resistance and disease development.

‘We believe an overwhelming number of these altered cells reach the lining of the abdominal cavity, survive and grow,’ said Dr. Bulun, obstetrician-gynaecologist-in-chief at Northwestern Memorial’s Prentice Women’s Hospital. ‘These findings could someday lead to the first non-invasive test for endometriosis.’

Clinicians could then prevent the disease by placing teenagers predisposed to this epigenetic change on a birth control pill regimen, preventing the possibility of retrograde menstruation in the first place.

Dyson will also look to use the epigenetic fingerprint resulting from the presence of GATA6 rather than GATA2 as a potential diagnostic tool, since these epigenetic differences are readily detectable.

‘These findings have the potential to shift how we view and treat the disease moving forward,’ Dr. Bulun said. Feinberg School of Medicine

Preventing sudden cardiac death through genetic diagnostics

The genetic disease ARVC leads to sudden cardiac death and is more common than it has been hitherto assumed. This is reported by an international team of researchers headed by Prof Dr Hendrik Milting from the Heart and Diabetes Center NRW. The molecular biologist working at the Ruhr-Universität’s clinic in Bad Oeynhausen revealed that all families who are known to be affected by the disease share the same genetic origin. There must be other families in Europe who also carry the genetic mutation but who are not yet known.
Scientists have thrown light on the genetic mutation that causes a particularly severe genetic disease (ARVC5) on the Canadian island Newfoundland in 2008. At first, they assumed that it was a genetic anomaly limited to this Canadian province. In 2010, Milting’s team – and at the same time a team of researchers from Copenhagen – proved that the ‘Newfoundland mutation’ did also occur in Europe. Today, the scientists know about affected families in Germany, Denmark, the USA and Canada. They all share common ancestors, as was demonstrated through genetic analysis. The scientists studied the environment of the TMEM43 gene in which the ARVC5-specific mutation is located. The genetic sequence in the neighbourhood of TMEM43 is typically highly variable; in all affected families, however, it was identical over long stretches. These findings verify a shared genetic origin.
The affected Danish and German families are not aware of the degree to which they are related; according to calculations, the mutation originated some 1300 to 1500 years ago. Thus, the ARVC5 mutation in the European families is not a novel mutation but an old European heritage. Therefore, there must be other families with that genetic mutation, who constitute the bridge between the patients in Europe and in North America. Two novel families with that mutation have recently been identified in Madrid. ‘In cases of sudden cardiac death in the family, people should sit up and take notice,’ says Prof Milting. ‘The families that are known to us have lost several male family members within a short space of time, even though they were under medical observation. Women frequently suffer from cardiac arrhythmias.’ Suspected cases must be looked into, warns the molecular biologist, because people carrying that mutation will definitely get the disease. Sudden cardiac death may be prevented if a defibrillator is implanted in good time.
Genetic analyses are increasingly gaining in importance in healthcare settings as prevention and diagnostic tools. ‘Nevertheless, healthcare professionals are called upon to exercise great discretion when deciding which analyses must necessarily be conducted for which patients,’ stresses Hendrik Milting. ‘After all, the objective is not to stigmatise the affected families, but to prevent severe heart diseases or even sudden cardiac death.’ A team of molecular biologists, cardiologists and human geneticists is in charge of this task at the Heart and Diabetes Center NRW.
The acronym ARVC stands for arrhythmogenic right ventricular cardiomyopathy. A considerable number of patients, most of them men, suffer sudden cardiac death without having ever shown any signs of a cardiovascular disease. The average life expectancy of men who have the ARVC5 genetic mutation is about 41 years. Ruhr University Bochum

Common mutation is culprit in acute leukaemia relapse

Harvard stem cell scientists have identified a mutation in human cases of acute lymphoblastic leukaemia that likely drives relapse. The research could translate into improved patient care strategies for this particular blood cancer, which typically affects children but is more deadly in adults.

In recent years, a trend toward single-cell analysis has shown that individual cells within a tumour are capable of amassing mutations to make them more aggressive and treatment resistant. So while 99% of a tumour may be destroyed by the initial treatment, a particularly aggressive cell can survive and then cause a cancer patient with the ‘all clear’ to relapse six months later.

Harvard Stem Cell Institute Principal Faculty member David Langenau, PhD, and his lab members in the Department of Pathology at Massachusetts General Hospital used zebrafish to search for these rare, relapse-driving leukaemia cells and then designed therapies that could kill these cells.

The researchers found that at least half of relapse-driving leukemic cells had a mutation that activated the Akt pathway, which rendered cells resistant to common chemotherapy and increased growth. From that insight, Langenau’s lab next examined human acute lymphoblastic leukaemia and discovered that inhibition of the Akt pathway restored leukemic cell responses to front-line chemotherapy.

‘The Akt pathway appears to be a major driver of treatment resistance,’ Langenau said. ‘We also show that this same pathway increases overall growth of leukemic cells and increases the fraction of cells capable of driving relapse.’

Jessica Blackburn, PhD, the study’s first author adds, ‘Our work will likely help in identifying patients that are prone to relapse and would benefit from co-treatment with inhibitors of the Akt pathway and typical front-line cancer therapy.’

In addition to determining how best to translate this finding into the clinic, Langenau hopes to identify other mutations that lead to relapse. The work should identify a host of other potential drug targets for patients with aggressive leukaemia. Harvard Stem Cell Institute

Gene family proven to suppress prostate cancer

Cornell researchers report they have discovered direct genetic evidence that a family of genes, called MicroRNA-34 (miR-34), are bona fide tumour suppressors.
Previous research at Cornell and elsewhere has shown that another gene, called p53, acts to positively regulate miR-34. Mutations of p53 have been implicated in half of all cancers. Interestingly, miR-34 is also frequently silenced by mechanisms other than p53 in many cancers, including those with p53 mutations.
The researchers showed in mice how interplay between genes p53 and miR-34 jointly inhibits another cancer-causing gene called MET. In absence of p53 and miR-34, MET overexpresses a receptor protein and promotes unregulated cell growth and metastasis.
This is the first time this mechanism has been proven in a mouse model, said Alexander Nikitin, a professor of pathology in Cornell’s Department of Biomedical Sciences and the paper’s senior author. Chieh-Yang Cheng, a graduate student in Nikitin’s lab, is the paper’s first author.
In a 2011 Proceedings of the National Academy of Sciences paper, Nikitin and colleagues showed that p53 and miR-34 jointly regulate MET in cell culture but it remained unknown if the same mechanism works in a mouse model of cancer (a special strain of mice used to study human disease).
The findings suggest that drug therapies that target and suppress MET could be especially successful in cancers where both p53 and miR-34 are deficient.
The researchers used mice bred to develop prostate cancer, then inactivated the p53 gene by itself, or miR-34 by itself, or both together, but only in epithelium tissue of the prostate, as global silencing of these genes may have produced misleading results.
When miR-34 genes alone were silenced in the mice, the mice developed cancer free. When p53 was silenced by itself, there were signs of precancerous lesions early in development, but no cancer by 15 months of age. When miR-34 and p53 genes were both silenced together, the researchers observed full prostate cancer in the mice.
The findings revealed that ‘miR-34 can be a tumour-suppressor gene, but it has to work together with p53,’ Nikitin said.
In mice that had both miR-34 and p53 silenced concurrently, cancerous lesions formed in a proximal part of the prostrate ducts, in a compartment known to contain prostate stem cells. The early lesions that developed when p53 was silenced alone occurred in a distal part of the ducts, away from the compartment where the stem cell pool is located. This suggested there was another mechanism involved when p53 and miR-34 were jointly silenced.
Also, the number of stem cells in mice with both p53 and miR-34 silenced increased substantially compared with control mice or mice with only miR-34 or p53 independently silenced.
‘These results indicated that together [miR-34 and p53] regulate the prostate stem cell compartments,’ said Nikitin.
This is significant, as cancer frequently develops when stem cells become unregulated and grow uncontrollably, he said.
Researchers further found that p53 and miR-34 affect stem cell growth by regulating MET expression. In absence of p53 and miR-34, MET is overexpressed, which leads to uncontrolled growth of prostate stem cells and high levels of cancer in these mice.
Future work will further examine the role of p53/miR-34/MET genes in stem cell growth and cancer. The findings have implications for many types of cancer. Cornell University

Solutions for Confirmatory Testing

Waters has developed a portfolio of complete solutions, including instrument configurations, sample preparation techniques, robust applications development and straightforward result interpretations to consistently meet the technical challenges specifically facing toxicology and forensic laboratories.

Waters has combined the unmatched resolution of UPLC chromatography with the selectivity and sensitivity of mass spectrometry, to enable laboratories to identify and quantify compounds from complex matrices within minutes. In addition, Waters UPLC-MS/MS solutions include powerful interpretation software, chemistries, dedicated applications and support services that expand your analytical capabilities and workflow.

Our dedicated Toxicology team maintains a library of the latest in quantitative methods for forensic toxicology, to save you time and effort of developing complex methods from basic principles. Waters is committed to utilizing the newest instruments to provide the latest, cutting edge applications across a diverse set of sample matrixes and compounds classes including:

Compound classes:

  • Opiates
  • Synthetic and/or “Designer Drugs”
  • Cannabinoids
  • Benzodiazepines
  • Cocaine and metabolites
  • Anti-psychotics/anti-depressants
  • Hallucinogens
  • Ethanol biomarkers

Sample Matrices

  • Urine
  • Blood/plasma
  • Oral fluid
  • Hair
  • Meconium
  • Bone
  • Sweat

Our vast experience in the development and installation of toxicology solutions with leading laboratories enables us to support your lab in achieving the best possible results to maximize your return on investment.

Researchers identify novel marker and possible therapeutic target for cardiovascular calcification

Cardiovascular calcification (deposits of minerals in heart valves and blood vessels) is a primary contributor to heart disease, the leading cause of death among both men and women in the United States according the Centers for Disease Control and Prevention (CDC).
‘Unfortunately, there currently is no medical treatment for cardiovascular calcification, which can lead to acute cardiovascular events, such as myocardial infarction and stroke, as well as heart failure,’ says Elena Aikawa, MD, PhD, Director of the Vascular Biology Program at the Center for Interdisciplinary Cardiovascular Sciences at Brigham and Women’s Hospital (BWH) and Associate Professor of Medicine at Harvard Medical School. ‘We have not found a way to reverse or slow this disease process, which is associated with ageing and common chronic conditions like atherosclerosis, diabetes, and kidney disease.’
Led by Dr. Aikawa, a team of researchers at BWH and Kowa Company, Ltd., a Japanese pharmaceutical company, has discovered certain proteins in osteoclasts, a precursor to bone, that may be used in helping to destroy cardiovascular calcification by dissolving mineral deposits. The research suggests a potential therapeutic avenue for patients with cardiovascular calcification.
Mature osteoclasts are not typically found in the vasculature. Using unbiased global proteomics (study of proteins), the researchers were able to examine osteoclast-like cells in the vasculature to determine which proteins induced osteoclast formation. They identified more than 100 proteins associated with osteoclast development. Follow-up study validated six candidate proteins, which serve as targets for possible medications that may help promote osteoclast development in the vasculature.
‘To advance this research, we need to further understand why osteoclasts are not prevalent in the vaculature, despite active calcification of the heart valves and blood vessels, and determine the difference between calcification in vasculature compared with calcification in bone,’ said Dr. Aikawa. ‘Then, we may examine ways to form osteoclasts in the vasculature.’ Brigham and Women’s Hospital

‘Velcro protein’ found to play surprising role in cell migration

Studying epithelial cells, the cell type that most commonly turns cancerous, Johns Hopkins researchers have identified a protein that causes cells to release from their neighbours and migrate away from healthy mammary, or breast, tissue in mice. They also found that deletion of a cellular ‘Velcro protein’ does not cause the single-celled migration expected. Their results, they say, help clarify the molecular changes required for cancer cells to metastasize.

Because epithelial cells give rise to 85 percent of all cancers, the work may have implications outside of breast cancer.

Epithelial cells line the inside and outside of organs throughout the body. The team focused their work on mammary epithelial cells, which form the ducts that carry milk within the breast. ‘Tumour cells have to break their connections to other epithelial cells in order to leave the breast and build metastases in other parts of the body,’ explains Andrew Ewald, Ph.D., assistant professor of cell biology and oncology at the Johns Hopkins University School of Medicine.

For their study, Ewald’s team removed small pieces of mammary tissue from normal mice and grew them in gels that mimic their natural environment. By using coloured proteins to mark different types of cells, they were able to use microscopes to watch how cell behaviour varied with the genetics of the cells.

The first protein they studied was E-cadherin, which is found on the surface of most epithelial cells and is used to connect epithelial cells to each other. E-cadherin is like the Velcro that holds epithelial cells together, and its absence is often associated with human breast cancers, says Ewald.

In one experiment, the team deleted the protein from normal mouse mammary cells and watched what happened. Expecting the cells to completely disconnect and move out on their own into the surrounding gel, the researchers were surprised to find that most of the epithelial cells remained connected to each other, although their organisation was disrupted. Some of the epithelial cells did penetrate the gel, but usually in single-file ‘columns’ that remained connected to the tissue. A similar result was seen in live mice.

‘For tumour cells to metastasise, they have to begin interacting with the proteins outside of the tumour and eventually strike out on their own,’ says Eliah Shamir, a graduate student in Ewald’s lab and lead author on the study. ‘When we deleted E-cadherin, the epithelial cells began interacting more with proteins in the gel, but they didn’t lose contact with the rest of the mammary tissue.’

In a second set of experiments, the team turned on a gene called Twist1, which is thought to affect the activity of many genes needed to transform groups of stationary epithelial cells into independent, mobile cells. The result, they say, was dramatic. Within 24 hours of turning on Twist1, dozens of individual cells began to move past the epithelial boundary and into the gel beyond. Again, similar results were seen when the experiment was repeated in live mice.

Surprisingly, the researchers say that when they caused epithelial cells lacking E-cadherin to turn on Twist1, the cells were no longer able to escape into the gel as single cells. Instead, they created many ‘columns’ of cells, which didn’t detach from the mammary tissue. These results suggest that the single-celled detachment and migration induced by Twist1 actually requires the presence of E-cadherin — the Velcro protein that helps bind the cells together. ‘This finding is quite counterintuitive,’ Ewald says, ‘and we are eager to understand the biology behind it.’

Since Twist1 is known to affect the activity of many genes, the researchers have begun to narrow down which of those genes is responsible for the cellular spread they witnessed. With that information, they hope to identify new means of preventing metastasis.

‘Our goal is to improve outcomes for patients with metastatic breast cancer, and this work takes us one step closer to doing so,’ says Ewald. John Hopkin’s Medicine