The iHemOStasis application, created by Stago and available on iPad*, is intended for current and future healthcare professionals (pathologists, doctors, students, etc.) and more generally for anyone wanting to improve their knowledge of hemostasis.
This free educational application in English is the first of its kind and has been developed by Stago, an expert in Hemostasis.
The iHemOStasis app consists in 4 parts:
The coagulation cascade: animations showing the major mechanisms involved in coagulation, with descriptions of the various stages (general principle, primary hemostasis, fibrin formation and fibrinolysis, the PC-PS-PZ system, anticoagulants)
Clinical cases in quiz form, with answers and explanations, to test user knowledge on real case studies
Practical guide: overview of the key points to remember in hemostasis testing, normal values, decision trees, monitoring therapy
Special focus series: fact sheets on specific topics (anticoagulants, thrombin generation, flow cytometry, normal values for hemostasis tests in childhood and pregnancy)
iHemOStasis is available worldwide from the App store.
www.stago.com
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In laboratory studies, scientists at the Johns Hopkins Kimmel Cancer Center have developed a way to personalise chemotherapy drug selection for cancer patients by using cell lines created from their own tumors.
If the technique is successful in further studies, it could replace current laboratory tests to optimise drug selection that have proven technically challenging, of limited use, and slow, the researchers say.
Oncologists typically choose anticancer drugs based on the affected organs’ location and/or the appearance and activity of cancer cells when viewed under a microscope. Some companies offer commercial tests on surgically removed tumours using a small number of anticancer drugs. But Anirban Maitra, MBBS, professor of pathology and oncology at the Johns Hopkins University School of Medicine, says the tissue samples used in such tests may have been injured by anaesthetic drugs or shipping to a lab, compromising test results.
By contrast, he says ‘our cell lines better and more accurately represent the tumours, and can be tested against any drug library in the world to see if the cancer is responsive.’
The Johns Hopkins scientists developed their test-worthy cell lines by injecting human pancreatic and ovarian tumour cells into mice genetically engineered to favour tumour growth. Once tumours grew to one centimetre in diameter in the mice, the scientists transferred the tumours to culture flasks for additional studies and tests with anticancer drugs.
In one experiment, they successfully pinpointed the two anticancer drugs from among more than 3,000 that were the most effective in killing cells in one of the pancreatic cancer cell lines
The new method was designed to overcome one of the central problems of growing human tumour cell lines in a laboratory dish — namely the tendency of non-cancerous cells in a tumour to overgrow cancerous ones, says James Eshleman, M.D., Ph.D., professor of pathology and oncology and associate director of the Molecular Diagnostics Laboratory at Johns Hopkins. As a consequence, it has not been possible to conventionally grow cell lines for some cancers. Still other cell lines, Eshleman says, don’t reflect the full spectrum of disease.
To solve the problem of overcrowding by non-cancerous cells, Maitra and Eshleman bred genetically engineered mice that replace the non-cancerous cells with mouse cells that can be destroyed by chemicals, leaving pure human tumour cells for study.
‘Our technique allows us to produce cell lines where they don’t now exist, where more lines are needed, or where there is a particularly rare or biologically distinctive patient we want to study,’ says Eshleman.
John Hopkin’s Hospital
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A type of low-grade but sometimes lethal brain tumour in children has been found in many cases to contain an unusual mutation that may help to classify, diagnose and guide the treatment of the tumours, report scientists at Dana-Farber Cancer Institute.
The researchers led a study of pediatric low-grade gliomas, samples of which were collected through an international consortium organised by brain tumour specialists at Dana-Farber/Children’s Hospital Cancer Center.
Low-grade gliomas are the most common type of pediatric brain tumours, diagnosed in about 1,000 young patients annually in the United States. There are about 30 distinct types of these tumours, which arise from specialized cells called glia in the brain. Low-grade gliomas are generally slow-growing, said Keith Ligon, MD, PhD, a senior author of the study, but they behave unpredictably and can be life-threatening.
The investigators focused on diffuse low-grade gliomas, so-called because they lack a tumour mass but spread throughout the brain. As a result, diffuse gliomas often recur after surgery and are more likely to evolve into lethal glioblastomas than are non-diffuse low-grade tumours. ‘Many of these patients do well, but it’s hard to generalise as the tumours are difficult to diagnose and study because without better tools pathologists can’t name them consistently,’ explained Ligon, who in addition to being a researcher is also a neuropathologist. The research was undertaken in hopes of identifying a common genetic alteration that could be used to better define and design treatments for them.
The researchers analysed DNA from 45 tissue samples collected from seven institutions in collaboration with Rameen Beroukhim, MD, PhD, a Dana-Farber genome biologist and co- senior author of the study. They looked for mutations caused by extra or missing copies of DNA code in the tumour genomes.
One alteration stood out: a gene called MYBL1, a transcription factor important for controlling other genes, was rearranged and missing a part of its genetic message in nearly 30 percent of the diffuse tumours categorised as grade 2 in terms of aggressiveness. The scientists went on to show that the mutated version of MYBL1 can cause tumours in mice. Previously MYLB1 was not known to cause cancer, but a closely related gene, MYB, is one of the oldest ‘proto-oncogenes’ – a normal gene that can become a cancer-causing gene.
‘The creation of these truncated genes, reminiscent in structure of the viral oncogene, is a potential driver for this type of tumour,’ said Lori Ramkissoon, PhD, co-first author along with Peleg Horowitz, MD, PhD, a neurosurgery resident, both of Dana-Farber. ‘It gives us something to follow up on and investigate the function of this gene. It may lead to a specific test for diagnosing these tumours, and we will also try to determine whether patients who have this mutation do better or worse than those lacking the mutation.’
EurekAlert
A study led by researchers at the Max Planck Florida Institute for Neuroscience, the first and only U.S. extension of the prestigious Max Planck Society, may hold a breakthrough in the fight to treat Alzheimer’s disease. The study potentially identifies a cause of Alzheimer’s disease—based on a newly-discovered signalling pathway in cellular models of Alzheimer’s disease—and opens the door for new treatments by successfully blocking this pathway. The Institute, which recently opened in December 2012, focuses solely on basic neuroscience research that aims to analyse, map, and decode the human brain—the most important and least understood organ in the body.
‘This study transforms our understanding of the direct cause of Alzheimer’s disease,’ said Principal Investigator Dr. Ryohei Yasuda. ‘With further research, we may open up an entirely new avenue for treatments to combat this disease.’
The scientific community so far has widely accepted that Alzheimer’s disease is caused by the accumulation of a peptide called Amyloid beta. When Amyloid beta is applied to neurons, neuronal morphology becomes abnormal and synaptic function is impaired. However, how Amyloid beta causes dysfunction is unknown. The MPFI research indicates that the presence of Amyloid beta triggers increased levels of a signalling protein, called centaurin-1 (CentA1), that appears to cause neuronal dysfunction – a potentially groundbreaking discovery that uncovers an important intermediary step in the progression of the disease.
As part of the research, the scientists were able to identify CentA1 and measure its negative effects on neurons. Utilising an RNA silencing technique, they turned down the cellular production of CentA1, and showed that affected neurons, exposed to Amyloid beta and exhibiting Alzheimer’s related symptoms, returned to normal morphology and synaptic function, even with the continued presence of Amyloid beta. They further found that increased CentA1 activates a series of proteins, and these proteins form a signalling pathway from CentA1 to neuronal dysfunction. Thus, inhibiting other proteins in the pathway also ‘cured’ affected neurons.
The initial tests reported were conducted on rat brain slices. MPFI has already started to expand their studies to mouse models of Alzheimer’s disease and preliminary experiments show promising results. Ultimately, targeting the components of this newly identified signalling pathway has the potential to open the door for new pharmacological and gene therapies in treatment of Alzheimer’s disease. Dr. Yasuda also anecdotally reports that the effects of CentA1 knock down were observed to be sustained over several weeks and an avenue for future study will be to examine how long the positive effects on neurons are sustained which may indicate the potential impact of treatments derived from this research.
EurekAlert
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A simple, inexpensive blood test performed on trauma patients upon admission can help doctors easily identify patients at greatest risk of death, according to a new study by researchers at Intermountain Medical Center.
The Intermountain Medical Center research study of more than 9,500 patients discovered that some trauma patients are up to 58 times more likely to die than others, regardless of the severity of their original injury.
Researchers say the study findings provide important insight into the long-term prognosis of trauma patients, something not previously well understood.
‘The results were very surprising,’ said Sarah Majercik, MD, an Intermountain Medical Center surgeon and trauma researcher, whose team discovered that a tool developed at Intermountain Medical Center, called the Intermountain Risk Score, can predict mortality among trauma patients.
The Intermountain Risk Score is a computerised tool available to physicians that combines factors like age, gender, and common blood tests known as the complete blood count (CBC) and the basic metabolic profile (BMP) to determine an individual’s mortality risk.
All of the components of the tool have been helpful in evaluating individuals with medical problems like heart failure or chronic pulmonary disease. But until now, the benefit of the tool had not been tested for trauma patients hospitalised due to an accident or traumatic injury, rather than an underlying condition.
‘As surgeons, we don’t often use all of the CBC results in evaluating a patient who needs surgery for a bleeding spleen or after a motor vehicle accident, said Dr. Majercik. ‘There are certain values, such as haemoglobin, hematocrit, and platelets that we scrutinise closely as part of good clinical care, but then other parts, such as the red blood cell distribution width (RDW) that we pay no attention to at all in the acute setting. These factors are generally overlooked, even though they are part of the CBC that every trauma patient gets when he or she arrives in the emergency room.’
Data from the Intermountain Risk Score tool will allow physicians to take additional precautions with patients who are at greatest risk, and also give doctors important information to consider when talking about prognosis with patients and families.
Dr. Majercik and her colleague Benjamin Horne, PhD, director of cardiovascular and genetic epidemiology at the Intermountain Medical Center Heart Institute, reviewed the cases of 9,538 patients who had been admitted to the hospital with trauma during a six-year period.
Using the tool, the Intermountain Medical Center categorised patients according to high, moderate, and low risk levels. Some surprising findings:
High-risk men were nearly 58 times more likely to die within a year than low-risk men. Men with a moderate risk were nearly 13 times more likely to die than those with low risk.
High-risk women were 19 times more likely to die within a year than low-risk women. And women with moderate risk were five times more likely to die than those with low risk.
‘Some risk factors will be already apparent for physicians, but others aren’t intuitive,’ said Dr. Horne. For example, a trauma patient may look completely healthy apart from his or her injury. But if the Intermountain Risk Score tool uncovers an irregular red blood cell distribution width — a common sign of anaemia — that will increase his risk of dying.
‘It’s a standard part of the CBC test, but it’s not usually taken into consideration when treating a patient with injuries,’ said Dr. Horne. ‘Based on the findings of our research, it’s something that should be looked at as part of the care plan model.’
Dr. Majercik and Dr. Horne believe their research will give physicians a simple, fast way to better understand their patients’ condition, and may lead to new treatment approaches that could reduce the risk of death.
Intermountain Medical Center
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Using a novel method of analysing genetic variations in families, researchers at Johns Hopkins have found that individually harmless genetic variations affecting related biochemical processes may team up to increase the risk of schizophrenia. They say their findings bring some clarity to the murky relationship between genetics and schizophrenia, and may lead to a genetic test that can predict which medications will be effective for individual patients.
‘It’s long been clear that schizophrenia runs in families, but schizophrenia as a simple inherited disease didn’t make sense from an evolutionary point of view because people with the disease tend to have fewer children and the disease-causing genetic variants shouldn’t survive,’ says Dimitri Avramopoulos, M.D., Ph.D., an associate professor of psychiatry in the McKusick-Nathans Institute of Genetic Medicine. Moreover, he says, studies searching for schizophrenia-linked gene variants have found only weak connections to a few genes — nothing that would explain the persistent prevalence of the disease, which affects about 1 percent of the population.
Most geneticists believe that the culprit in so-called complex genetic diseases such as schizophrenia is not just one genetic variant, but more than one acting in concert. It’s also likely that individual cases of the disease are caused by different combinations of variants, Avramopoulos says. He and fellow researchers took this hypothesis a step further, theorising that while our bodies can usually compensate for one faulty gene that affects a particular system, more than one hit to the same system is likely to tip people toward disease.
The research team devised a technique for analysing gene-sequencing data that explores whether variants cluster in a subset of cases in a non-random way. After finding support for their hypothesis in previously obtained data on 123 families with at least two schizophrenia-affected members, they decided to sequence genes connected through a biochemical chain reaction that has been linked to the disease in 48 inpatients. Known as the neuregulin signalling pathway, that chain reaction relays signals within the nervous system.
As they had predicted, the researchers found that some of the families had multiple neuregulin signalling-related variants while others had none, a distribution that was highly unlikely to result from chance. Moreover, the schizophrenia patients with neuregulin signalling variants experienced more hallucinations but less impairment than the other schizophrenia patients in the study.
‘These results support the idea that there’s no single genetic recipe for schizophrenia, but that a build-up of mutations in a pathway related to the disease — like neuregulin signalling — can be the culprit,’ Avramopoulos says. ‘The results are also evidence for the current theory that schizophrenia isn’t a single disease at all, but a suite of related disorders.’ Those patients in the study who did not have neuregulin signalling-related variants likely carried variants in a different pathway instead, he notes.
While the results of the study were surprisingly clear-cut given the small number of families in the study, Avramopoulos cautions that larger studies are needed to confirm the results before drawing any firm conclusions. He also plans to study the exact roles of the schizophrenia-linked variants the team identified. Finally, the encouraging results mean it would be worthwhile to apply the new analytic method to other common diseases, such as diabetes and heart disease, which also appear to have complex genetic roots.
John Hopkins University School of Medicine
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How do nerve cells — which can each be up to three feet long in humans — keep from rupturing or falling apart?
Axons, the long, cable-like projections on neurons, are made stronger by a unique modification of the common molecular building block of the cell skeleton. The finding, which may help guide the search for treatments for neurodegenerative diseases.
Microtubules are long, hollow cylinders that are a component of the cytoskeleton in all cells of the body. They also support transport of molecules within the cell and facilitate growth. They are made up of polymers of a building-block substance called tubulin.
‘Except for neurons, cells’ microtubules are in constant dynamic flux — being taking apart and rebuilt,’ says Scott Brady, professor and head of anatomy and cell biology at UIC and principal investigator on the study. But only neurons grow so long, he said, and once created they must endure throughout a person’s life, as much as 80 to 100 years. The microtubules of neurons are able to withstand laboratory conditions that cause other cells’ microtubules to break apart.
Brady had been able to show some time ago that the neuron’s stability depended on a modification of tubulin.
‘But when we tried to figure out what the modification was, we didn’t have the tools,’ he said.
Yuyu Song, a former graduate student in Brady’s lab and the first author of the study, took up the question. ‘It was like a detective story with many possibilities that had to be ruled out one by one,’ she said. Song, who is now a post-doctoral fellow at Howard Hughes Medical Institute at Yale School of Medicine, used a variety of methods to determine the nature of the modification and where it occurs.
She found that tubulin is modified by the chemical bonding of polyamines, positively charged molecules, at sites that might otherwise be chinks where tubulin could be broken down, causing the microtubules to fall apart. She was also able to show that the enzyme transglutaminase was responsible for adding the protective polyamines.
The blocking of a vulnerable site on tubulin would explain the extraordinary stability of neuron microtubules, said Brady. However, convincing others required the ‘thorough and elegant work’ that Song brought to it, he said. ‘It’s such a radical finding that we needed to show all the key steps along the way.’
The authors also note that increased microtubule stability correlates with decreased neuronal plasticity — and both occur in the process of ageing and in some neurodegenerative diseases. Continued research, they say, may help identify novel therapeutic approaches to prevent neurodegeneration or allow regeneration.
University of Illinois at Chicago College of Medicine
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Some of the dramatic differences seen among patients with schizophrenia may be explained by a single gene that regulates a group of other schizophrenia risk genes.
The study revealed that people with schizophrenia who had a particular version of the microRNA-137 gene (or MIR137), tended to develop the illness at a younger age and had distinct brain features – both associated with poorer outcomes – compared to patients who did not have this version. This work was led by Drs. Aristotle Voineskos and James Kennedy.
Treating schizophrenia is particularly challenging as the illness can vary from patient to patient. Some individuals stay hospitalised for years, while others respond well to treatment.
‘What’s exciting about this study is that we could have a legitimate answer as to why some of these differences occur,’ explained Dr. Voineskos, a clinician-scientist in CAMH’s Campbell Family Mental Health Research Institute. ‘In the future, we might have the capability of using this gene to tell us about prognosis and how a person might respond to treatment.’
‘Drs. Voineskos and Kennedy’s findings are very important as they provide new insights into the genetic basis of this condition that affects thousands of Canadians and their families,’ says Dr. Anthony Phillips, Scientific Director at the Canadian Institutes of Health Research Institute of Neurosciences, Mental Health and Addiction.
Also, until now, sex has been the strongest predictor of the age at which schizophrenia develops in individuals. Typically, women tend to develop the illness a few years later than men, and experience a milder form of the disease.
‘We showed that this gene has a bigger effect on age-at-onset than one’s gender has,’ said Dr. Voineskos, who heads the Kimel Family Translational Imaging-Genetics Research Laboratory at CAMH. ‘This may be a paradigm shift for the field.’
The researchers studied MIR137 — a gene involved in turning on and off other schizophrenia-related genes — in 510 individuals living with schizophrenia. The scientists found that patients with a specific version of the gene tended to develop the illness at a younger age, around 20.8 years of age, compared to 23.4 years of age among those without this version.
‘Although three years of difference in age-at-onset may not seem large, those years are important in the final development of brain circuits in the young adult,’ said Dr. Kennedy, Director of CAMH’s Neuroscience Research Department. ‘This can have major impact on disease outcome.’
In a separate part of the study involving 213 people, the researchers used magnetic resonance brain imaging (MRI) and diffusion tensor-MRI (DT-MRI). They found that individuals with the particular gene version tended to have unique brain features. These features included a smaller hippocampus, which is a brain structure involved in memory, and larger lateral ventricles, which are fluid-filled structures associated with disease outcome. As well, these patients tended to have more impairment in white matter tracts, which are structures connecting brain regions, that serve as the information highways of the brain.
Developing tests that screen for versions of this gene could be helpful in treating patients earlier and more effectively.
‘We’re hoping that in the near future we can use this combination of genetics and brain imaging to predict how severe a version of illness someone might have,’ said Dr. Voineskos. ‘This would allow us to plan earlier for specific treatments and clinical service delivery and pursue more personalised treatment options right from the start.’
This research was funded by the Canadian Institutes of Health Research, the Brain & Behavior Research Foundation and the Ontario Mental Health Foundation.
Centre for Addiction and Mental Health (CAMH)
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A new study looking at the genomes of more than 13,000 men identified four new genetic variants associated with an increased risk of testicular cancer, the most commonly diagnosed type in young men today.
The discovery of these genetic variations—chromosomal ‘typos,’ so to speak—could ultimately help researchers better understand which men are at high risk and allow for early detection or prevention of the disease.
‘As we continue to cast a wider net, we identify additional genetic risk factors, which point to new mechanisms for disease,’ said Katherine L. Nathanson, MD, associate professor in the division of Translational Medicine and Human Genetics within the department of Medicine. ‘Certain chromosomal regions, what we call loci, are tied into testicular cancer susceptibility, and represent a promising path to stratifying patients into risk groups—for a disease we know is highly heritable.’
Tapping into three genome-wide association studies (GWAS), the researchers, including Peter A. Kanetsky, PhD, MPH, an associate professor in the department of Biostatistics and Epidemiology, analyzed 931 affected individuals and 1,975 controls and confirmed the results in an additional 3,211 men with cancer and 7,591 controls. The meta-analysis revealed that testicular germ cell tumor (TGCT) risk was significantly associated with markers at four loci—4q22, 7q22, 16q22.3, and 17q22, none of which have been identified in other cancers. Additionally, these loci pose a higher risk than the vast majority of other loci identified for some common cancers, such as breast and prostate.
This brings the number of genomic regions associated with testicular cancer up to 17—including eight new ones reported in another study.
Testicular cancer is relatively rare; however, incidence rates have doubled in the past 40 years. It is also highly heritable. If a man has a father or son with testicular cancer, he has a four-to six-fold higher risk of developing it compared to a man with no family history. That increases to an eight-to 10-fold higher risk if the man has a brother with testicular cancer.
Given this, researchers continue to investigate genetic variants and their association with cancer.
In 2009, Dr. Nathanson and colleagues uncovered variation around two genes—KITLG and SPRY4—found to be associated with an increased risk of testicular cancer. The two variants were the first striking genetic risk factors found for this disease at the time. Since then, several more variants have been discovered, but only through single GWAS studies.
‘This analysis is the first to bring several groups of data together to identify loci associated with disease,’ said Dr. Nathanson, ‘and represent the power of combining multiple GWAS to better identify genetic risk factors that failed to reach genome-wide significance in single studies.’
The team also explains how the variants associated with increased cancer risk are the same genes associated with chromosomal segregation. The variants are also found near genes important for germ cell development. These data strongly supports the notion that testicular cancer is a disorder of germ cell development and maturation.
Perelman School of Medicine
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Genetic screening for prostate cancer is now a real possibility following results from the largest-ever study into inherited risk factors for the disease. A clinical trial is likely to start this year as a result of the ground-breaking findings from an international group led by The Institute of Cancer Research, London, and the University of Cambridge, funded by Cancer Research UK and the European Commission.
The three-year study of 50,000 men (prostate cancer patients and controls without cancer) identified 23 new genetic variations associated with an increased risk of the disease. This raises the total discovered so far to 78. Significantly, 16 of the 23 newly discovered genetic changes are associated with the disease at its most aggressive and life-threatening.
None of the 23 genetic changes on its own raises a man’s risk of prostate cancer by more than a slight amount. But when a man has a number of the genetic changes these can combine to raise his risk significantly. With the genetic changes discovered, scientists can for the first time identify men who have inherited just over a 50% lifetime risk of developing prostate cancer.
Following these discoveries scientists now think they can identify the top 1% of men with the highest risk of developing prostate cancer who have 4.7 times the risk of the population average. It is these men who, it is hoped, will be identified by screening. They would then receive close monitoring in order that, if they do develop the disease, it is caught early when it is easier to treat. The way in which that screening would be conducted – for example, through blood tests or biopsies – will be indicated by the results of future clinical studies.
Study leader Professor Ros Eeles, Professor of Oncogenetics at The Institute of Cancer Research (ICR) and Honorary Clinical Consultant at The Royal Marsden NHS Foundation Trust, said: ‘These results are the single biggest leap forward in finding the genetic causes of prostate cancer yet made. They allow us, for the first time, to identify men who have a very high risk of developing prostate cancer during their lifetime through inheritance of multiple risk genetic variants. If we can show from further studies that such men benefit from regular screening, we could have a big impact on the number of people dying from the disease, which is still far too high.’
Over 40,000 men are diagnosed with prostate cancer in the UK each year, with almost 11,000 men dying from the disease. If it is caught early treatments are more effective, which is why identifying those most at risk, particularly from aggressive forms of the disease, is so important.
The team, from the ICR and the University of Cambridge, analysed 211,000 genetic variants from blood samples from 25,000 prostate cancer patients and compared them with those of a similar number of healthy men. The gene variants were analysed as part of the COGS (Collaborative Oncological Gene-environment Study) project, which publishes a series of research papers simultaneously today about the causes of prostate, breast and ovarian cancer.
The Institute of Cancer Research
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