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Archive for category: E-News

E-News

Elusive substrate protein identified in the most common form of heritable rickets

, 26 August 2020/in E-News /by 3wmedia

Diagnosed in toddlers, X-linked hypophosphatemia (XLH) is the most common form of heritable rickets, in which soft bones bend and deform, and tooth abscesses develop because infections penetrate soft teeth that are not properly calcified. Researchers at McGill University and the Federal University of Sao Paulo have identified that osteopontin, a major bone and tooth substrate protein, plays a role in XLH. Their discovery may pave the way to effectively treating this rare disease.
The findings were made by the laboratories of Marc McKee, a professor in the Faculty of Dentistry and the Department of Anatomy and Cell Biology at McGill University, and of Nilana M.T. Barros, a professor at the Federal University of Sao Paulo. The team built upon previous research that had shown that mutations in the single gene PHEX are responsible for causing XLH.
‘XLH is caused in part by renal phosphate wasting, which is the urinary loss from the body of phosphate, an important building block of bones and teeth, along with calcium.’ says Prof. McKee. ‘In pursuing other factors that might contribute to XLH, we used a variety of research methods to show that PHEX enzymatic activity leads to an essentially complete degradation of osteopontin in bones.’
This loss of osteopontin, a known potent inhibitor of mineralisation (or calcification) in the skeleton and dentition, normally allows bones and teeth to mineralise and thus harden to meet the biomechanical demands placed on them. In XLH patients lacking functional PHEX enzyme, osteopontin and some of its smaller potent inhibitory peptides are retained and accumulate within the bone. This prevents their hardening and leads to soft deformed bones such as bowed legs (or knock-knees) seen in toddlers.

While not life-threatening, this decreased mineralisation of the skeleton (osteomalacia), along with the soft teeth, soon leads to a waddling gait, short stature, bone and muscle pain, weakness and spontaneous tooth abscesses.

The fact that these symptoms are only partially improved by the standard treatment with phosphate – which improves circulating phosphate levels – prompted the researchers to look for local factors within the bone that might be blocking mineralisation in these patients.

‘With this new identification of osteopontin as a substrate protein for PHEX,’ says Professor Barros, ‘we can begin to develop an enzyme-replacement therapy to treat XLH patients who have non-functional PHEX, much as has been done using a different enzyme to treat another rare bone disease called hypophosphatasia.’ McGill University

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Discovery helps explain how children develop rare, fatal disease

, 26 August 2020/in E-News /by 3wmedia

One of 100,000 children is born with Menkes disease, a genetic disorder that affects the body’s ability to properly absorb copper from food and leads to neurodegeneration, seizures, impaired movement, stunted growth and, often, death before age 3. Now, a team of biochemistry researchers at the University of Missouri has published conclusive scientific evidence that the gene ATP7A is essential for the dietary absorption of the nutrient copper. Their work with laboratory mice also provides a greater understanding of how this gene impacts Menkes disease as scientists search for a treatment.

Humans cannot survive if their bodies are lacking the ATP7A gene, yet children can develop Menkes disease when the gene is mutated or missing. Previously, scientists did not have a good model to test the gene’s function or develop an understanding of the underlying causes of the disease symptoms. In his new study, Michael Petris, associate professor of biochemistry, was able to modify mice so that they were missing the ATP7A gene in certain areas of the body, specifically the intestinal track where nutrient absorption takes place.

‘These findings help us to understand where in the body the function of this gene is vital and how the loss of the gene in certain tissues can give rise to Menke’s disease,’ said Petris, who is a researcher in the Bond Life Sciences Center and holds an appointment in the Department of Nutrition and Exercise Physiology. ‘We want to continue to explore the underlying biology of Menke’s disease to determine where we should focus our research efforts in the future. If we know which organs or tissues are most responsible for transporting copper throughout the body, we can focus on making sure the gene is expressed in those areas. This disease is ideal for gene therapy down the road.’

Petris found that young mice missing the ATP7A gene in their intestinal cells were unable to absorb copper from food, resulting in an overall copper deficiency that mimics symptoms of Menkes disease in children. Petris says it’s vital to ensure that the developing newborns absorb enough copper during the neonatal period when the demand for the mineral is highest.

‘Copper is a little-appreciated but essential trace mineral in all body tissues,’ Petris said. ‘Cells cannot properly use oxygen without copper; it helps in the formation of red blood cells, and it helps keep the blood vessels, nerves, skin, immune system and bones healthy. Normally, people absorb enough copper through their food. However, in the bodies of those with Menkes disease, copper begins to accumulate at abnormally low levels in the liver and brain and at higher than normal levels in the kidney and intestinal lining.’

Newborn screening for this disorder is not routine, and early detection is infrequent because it can arise spontaneously in families, Petris said. Many times, the disease is not detected until the symptoms are noticed, and by that time, it can be too late for any aggressive treatments.

‘The clinical signs of Menkes disease are subtle in the beginning, so the disease is rarely treated early enough to make a significant difference,’ he said. ‘However, a single dose of copper injected into mice within a few days of birth restored normal growth and life expectancy. Early intervention was critical because treatment that began after symptoms developed wasn’t successful.’

Petris says that understanding the roles of copper in biology may have far-reaching health implications for the general population because copper underpins many facets of biology, including the growth of cancer tumours and the formation of toxic proteins in Alzheimer’s disease.

The development of these mice provides a novel experimental system in which to test treatments for patients with this disease. The early-stage results of this research are promising, but additional studies are needed. University of Missouri

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Tenfold boost in ability to pinpoint proteins in cancer cells

, 26 August 2020/in E-News /by 3wmedia

Better diagnosis and treatment of cancer could hinge on the ability to better understand a single cell at its molecular level. New research offers a more comprehensive way of analysing one cell’s unique behaviour, using an array of colours to show patterns that could indicate why a cell will or won’t become cancerous.

A University of Washington team has developed a new method for colour-coding cells that allows them to illuminate 100 biomarkers, a ten-time increase from the current research standard, to help analyse individual cells from cultures or tissue biopsies.
‘Discovering this process is an unprecedented breakthrough for the field,’ said corresponding author Xiaohu Gao, a UW associate professor of bioengineering. ‘This technology opens up exciting opportunities for single-cell analysis and clinical diagnosis.’

The research builds on current methods that use a smaller array of colours to point out a cell’s biomarkers – characteristics that indicate a special, and potentially abnormal or diseased, cell. Ideally, scientists would be able to test for a large number of biomarkers, then rely on the patterns that emerge from those tests to understand a cell’s properties.

The UW research team has created a cycle process that allows scientists to test for up to 100 biomarkers in a single cell. Before, researchers could only test for 10 at a time.

The analysis uses quantum dots, which are fluorescent balls of semiconductor material. Quantum dots are the smaller version of the material found in many electronics, including smartphones and radios. These quantum dots are between 2 and 6 nanometers in diameter, and they vary on the colour they emit depending on their size.

Cyclical testing hasn’t been done before, though many quantum dot papers have tried to expand the number of biomarkers tested for in a single cell. This method essentially reuses the same tissue sample, testing for biomarkers in groups of 10 in each round.
‘Proteins are the building blocks for cell function and cell behaviour, but their makeup in a cell is highly complex,’ Gao said. ‘You need to look at a number of indicators (biomarkers) to know what’s going on.’

The new process works like this: Gao and his team purchase antibodies that are known to bind with the specific biomarkers they want to test for in a cell. They pair quantum dots with the antibodies in a fluid solution, injecting it onto a tissue sample. Then, they use a microscope to look for the presence of fluorescent colours in the cell. If they see particular quantum dot colours in the tissue sample, they know the corresponding biomarker is present in the cell.

After completing one cycle, Gao and co-author Pavel Zrazhevskiy, a UW postdoctoral associate in bioengineering, inject a low-pH fluid into the cell tissue that neutralises the colour fluorescence, essentially wiping the sample clean for the next round. Remarkably, the tissue sample doesn’t degrade at all even after 10 such cycles, Gao said.
For cancer research and treatment, in particular, it’s important to be able to look at a single cell at high resolution to examine its details. For example, if 99 percent of cancer cells in a person’s body respond to a treatment drug, but 1 percent doesn’t, it’s important to analyse and understand the molecular makeup of that 1 percent that responds differently.

‘When you treat with promising drugs, there are still a few cells that usually don’t respond to treatment,’ said Gao. ‘They look the same, but you don’t have a tool to look at their protein building blocks. This will really help us develop new drugs and treatment approaches.’ University of Washington

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Irregular heartbeat elevates risk of kidney failure

, 26 August 2020/in E-News /by 3wmedia

The risk of kidney failure is greater for people with chronic kidney disease who also have atrial fibrillation, one of the most common forms of irregular heart rhythm in adults, according to a new study by researchers at UCSF and the Kaiser Permanente Northern California Division of Research.
The finding opens the way for further studies into the relationship between the two factors, which could lead to new treatment approaches that would improve outcomes for people with chronic kidney disease.
Many people who suffer from chronic kidney disease progressively lose their kidney function over time and eventually develop a condition called end-stage renal disease – the complete failure of the kidneys – placing them in need of lifelong dialysis or a kidney transplant.
Doctors have known that patients with chronic kidney disease or end-stage renal disease commonly have atrial fibrillation and as a result are more likely to have a stroke or to die. However, the long-term impact of atrial fibrillation on kidney function among patients with known chronic kidney disease has been unknown.
The new study involved 206,229 adults with chronic kidney disease who were drawn from members of Kaiser Permanente Northern California, a large integrated health care delivery system.. Over the course of about five years, approximately 16,400 patients developed atrial fibrillation, and those who did were 67 percent more likely to progress to end-stage renal disease compared with patients who had chronic kidney disease but did not develop atrial fibrillation.
‘These novel findings expand on previous knowledge by highlighting that atrial fibrillation is linked to a worse kidney prognosis in patients with underlying kidney dysfunction,’ said kidney specialist Nisha Bansal, MD, an assistant professor in the Division of Nephrology at UCSF.
‘There is a knowledge gap about the long-term impact of atrial fibrillation on the risk of adverse kidney-related outcomes in patients with chronic kidney disease,’ said senior author Alan S. Go, MD, director of the Comprehensive Clinical Research Unit at the Kaiser Permanente Division of Research. ‘This study addresses that gap and may have important implications for clinical management by providing better prognostic information and leading to future work determining how to improve outcomes in this high-risk group of patients.’
UCSF is one of the world’s leading centres for kidney disease treatment, research and education. Its Division of Nephrology is ranked among the best programs in the nation by U.S. News & World Report.
People who have chronic kidney disease fall into a spectrum in terms of how severe their disease is.
At one end are those who have very minor loss of kidney function. They may not have any symptoms at all, and only by applying a simple blood test can doctors properly diagnose their disease.
At the other end of the spectrum are the people who have progressed to end-stage renal disease, which is basically complete kidney failure. They require lifelong dialysis or a kidney transplant. Some people progress rapidly to end-stage renal disease while others may live for decades without ever progressing.
Doctors are interested in understanding the factors that place patients at greater risk for end-stage renal disease, Bansal said, because it may be possible to address those factors through medications or lifestyle changes like diet or exercise.
Bansal added, however, that while the two conditions are intertwined, scientists do not know exactly which specific genes, pathways and biological mechanisms connect irregular heartbeat to declines in kidney function. Neither do they yet know the extent to which treating atrial fibrillation will improve outcomes for people with chronic kidney disease. University of California – San Francisco

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New genetic tests, more information

, 26 August 2020/in E-News /by 3wmedia

Our ability to analyse the genetic make-up of the human body has rapidly improved over the last few decades. The genetic basis of different diseases is gradually being deciphered through scientific research and more and more people are having genetic tests to diagnose or predict illness within the health care system.
Genetic tests developed over the past thirty years have focussed on identifying the cause for a range of different conditions. Targeted genetic testing looking at particular genes within the genetic code has thus been widely used. Techniques have now moved on so much, that it is often easier and cheaper to examine the entire genetic code, rather than home in on particular genes suggested by symptoms or a family history.
Genetic tests to date have therefore largely been done to answer particular questions; ‘Have I got a high chance of breast cancer?’ or ‘Have I inherited the condition in my family?’ Modern day genetic testing can also answer questions we haven’t posed, and which might reveal entirely unexpected risk of disease.
But what do our genes really say about us? And what if a genetic test showed something that wasn’t expected that could affect you in later life? And what is the effect on the individual’s family?
The University of Southampton is currently conducting a study, funded by Cancer Research UK and National Institute for Health Research, which is exploring the ethical issues in discovering unexpected genetic test results otherwise known as incidental findings (IFs). Through interviews with patients and health professionals the study is outlining how future clinical practice may have to change to incorporate the possibility discovering such incidental findings.
Professor Anneke Lucassen, a clinical geneticist at the University of Southampton and consultant in clinical genetics at Southampton General Hospital, comments: ‘Moving from targeted to broad genetic testing is resulting in a growing ethical and moral debate about how such tests should be used. There are questions we need to be thinking about as new technologies enter mainstream use.
‘Unlike an X-ray where you might unexpectedly find a tumour that needs management now, with genetic testing you might predict something that could happen in 10 or 20 years’ time. If you predict a genetic disease with any certainty, you are also potentially predicting something about their relatives who have not asked for the test. Should their relatives be told that they might also be at risk?
‘Medical technology is advancing at a rapid rate and could help a lot of people and their families, but the clinical guidelines and the advice for health professionals about communication and decision making needs to catch up.’
Anyone wanting to take part in the study should email cels@soton.ac.uk University of Southampton

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Scientists identify a potential target to reduce the progression of metastases, the main cause of death for breast cancer patients

, 26 August 2020/in E-News /by 3wmedia

Montréal scientists identified the DOCK1 protein as a potential target to reduce the progression of metastases in patients suffering from breast cancer, the most common type of cancer in women.

Dr. Côté’s laboratory is interested in metastasis, which is the spread of cancer from an organ (or part of an organ) to another. Nearly 90 per cent of cancer patient deaths are attributable to metastasis, thus explaining the importance of understanding the underlying cellular and molecular mechanisms of this harmful process.

‘Despite important breakthroughs in breast cancer treatment, few mechanisms are known to explain the spread of metastases,’ says Dr. Côté, Director of the Cytoskeletal Organization and Cell Migration research unit at the IRCM. ‘We are looking to identify the proteins that regulate the metastatic process so that new agents can be developed and combined with current treatments.’

Two major breast cancer subtypes, HER2+ and Basal, have a tendency to be metastatic and recurrent, and are ultimately associated to a poor survival rate. Research at the IRCM was conducted on the HER2+ type (Human Epidermal growth factor Receptor 2), which represents approximately 25 per cent of breast cancer cases. HER2 positive tumours tend to develop and spread more quickly than other types of tumours.

‘By studying a genetic mouse model with HER2+ breast cancer, we identified the protein DOCK1 as an important regulator of metastasis,’ explains Mélanie Laurin, doctoral student in Dr. Côté’s laboratory and first author of the study. ‘When we eliminated this protein in mice, our results showed a significant decrease in lung metastases. We also discovered that the DOCK1 protein contributes to the growth of tumours.’

‘To show the correlation between the expression of DOCK1 and breast cancer prognosis, we performed an analysis of several databases of patient genic,’ adds Dr. Benjamin Haibe-Kains, researcher at the IRCM who collaborated with Dr. Côté’s team. ‘We did indeed discover that high levels of DOCK1 in HER2+ or Basal breast cancer patients are associated with a lower prognosis, or recurrence of the disease.’

‘Our work defined a new molecule required for the progression of breast cancer to the metastatic stage and allowed us to identify new markers that could become potential targets to stop the progression of metastases,’ concludes Dr. Côté. ‘We also showed that a chemical inhibitor of the DOCK1 protein, developed by Dr. Yoshinori Fukui, our collaborator in Japan, can stop the migration of cancerous cells. These results could eventually lead to the development of drugs that would limit the progression of metastatic breast cancer and could thereby improve patient prognosis.’ Institut de recherches cliniques de Montréal

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New gene variant may explain psychotic features in bipolar disorder

, 26 August 2020/in E-News /by 3wmedia

Researchers at Karolinska Institutet have found an explanation for why the level of kynurenic acid (KYNA) is higher in the brains of people with schizophrenia or bipolar disease with psychosis. The study identifies a gene variant associated with an increased production of KYNA.
The discovery contributes to the further understanding of the link between inflammation and psychosis, and might pave the way for improved therapies. Kynurenic acid (KYNA) is a substance that affects several signalling pathways in the brain and that is integral to cognitive function. Earlier studies of cerebrospinal fluid have shown that levels of KYNA are elevated in the brains of patients with schizophrenia or bipolar diseases with psychotic features. The reason for this has, however, not been fully understood.
KMO is an enzyme involved in the production of KYNA, and the Karolinska Institutet team has now shown that some individuals have a particular genetic variant of KMO that affects its quantity, resulting in higher levels of KYNA. The study also shows that patients with bipolar disease who carry this gene variant had almost twice the chance of developing psychotic episodes.
KYNA is produced in inflammation, such as when the body is exposed to stress and infection. It is also known that stress and infection may trigger psychotic episodes. The present study provides a likely description of this process, which is more likely to occur in those individuals with the gene variant related to higher production of KYNA. The researchers also believe that the discovery can help explain certain features of schizophrenia or development of other psychotic conditions.
‘Psychosis related to bipolar disease has a very high degree of heredity, up to 80 per cent, but we don’t know which genes and which mechanisms are involved,’ says Martin Schalling, Professor of medical genetics at Karolinska Institutet’s Department of Molecular Medicine and Surgery, also affiliated to the Center for Molecular Medicine (CMM). ‘This is where our study comes in, with a new explanation that can be linked to signal systems activated by inflammation. This has consequences for diagnostics, and paves the way for new therapies, since there is a large arsenal of already approved drugs that modulate inflammation.’ Karolinska Institutet

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Alzheimer’s markers predict start of mental decline

, 26 August 2020/in E-News /by 3wmedia

Scientists at Washington University School of Medicine in St. Louis have helped identify many of the biomarkers for Alzheimer’s disease that could potentially predict which patients will develop the disorder later in life. Now, studying spinal fluid samples and health data from 201 research participants at the Charles F. and Joanne Knight Alzheimer’s Disease Research Center, the researchers have shown the markers are accurate predictors of Alzheimer’s years before symptoms develop.
‘We wanted to see if one marker was better than the other in predicting which of our participants would get cognitive impairment and when they would get it,’ said Catherine Roe, PhD, research assistant professor of neurology. ‘We found no differences in the accuracy of the biomarkers.’
The researchers evaluated markers such as the buildup of amyloid plaques in the brain, newly visible thanks to an imaging agent developed in the last decade; levels of various proteins in the cerebrospinal fluid, such as the amyloid fragments that are the principal ingredient of brain plaques; and the ratios of one protein to another in the cerebrospinal fluid, such as different forms of the brain cell structural protein tau.
The markers were studied in volunteers whose ages ranged from 45 to 88. On average, the data available on study participants spanned four years, with the longest recorded over 7.5 years.
The researchers found that all of the markers were equally good at identifying subjects who were likely to develop cognitive problems and at predicting how soon they would become noticeably impaired.
Next, the scientists paired the biomarkers data with demographic information, testing to see if sex, age, race, education and other factors could improve their predictions.
‘Sex, age and race all helped to predict who would develop cognitive impairment,’ Roe said. ‘Older participants, men and African Americans were more likely to become cognitively impaired than those who were younger, female and Caucasian.’
Roe described the findings as providing more evidence that scientists can detect Alzheimer’s disease years before memory loss and cognitive decline become apparent.
‘We can better predict future cognitive impairment when we combine biomarkers with patient characteristics,’ she said. ‘Knowing how accurate biomarkers are is important if we are going to some day be able to treat Alzheimer’s before symptoms and slow or prevent the disease.’
Clinical trials are already underway at Washington University and elsewhere to determine if treatments prior to symptoms can prevent or delay inherited forms of Alzheimer’s disease. Reliable biomarkers for Alzheimer’s should one day make it possible to test the most successful treatments in the much more common sporadic forms of Alzheimer’s. Washington University School of Medicine

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The first Stago iPad application dedicated to hemostasis

, 26 August 2020/in E-News /by 3wmedia

The iHemOStasis application, created by Stago and available on iPad*, is intended for current and future healthcare professionals (pathologists, doctors, students, etc.) and more generally for anyone wanting to improve their knowledge of hemostasis.

This free educational application in English is the first of its kind and has been developed by Stago, an expert in Hemostasis.

The iHemOStasis app consists in 4 parts:

  • The coagulation cascade: animations showing the major mechanisms involved in coagulation, with descriptions of the various stages (general principle, primary hemostasis, fibrin formation and fibrinolysis, the PC-PS-PZ system, anticoagulants)
  • Clinical cases in quiz form, with answers and explanations, to test user knowledge on real case studies
  • Practical guide: overview of the key points to remember in hemostasis testing, normal values, decision trees, monitoring therapy
  • Special focus series: fact sheets on specific topics (anticoagulants, thrombin generation, flow cytometry, normal values for hemostasis tests in childhood and pregnancy)

iHemOStasis is available worldwide from the App store.

www.stago.com
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Scientists create method to personalise chemotherapy drug selection

, 26 August 2020/in E-News /by 3wmedia

In laboratory studies, scientists at the Johns Hopkins Kimmel Cancer Center have developed a way to personalise chemotherapy drug selection for cancer patients by using cell lines created from their own tumors.
If the technique is successful in further studies, it could replace current laboratory tests to optimise drug selection that have proven technically challenging, of limited use, and slow, the researchers say.
Oncologists typically choose anticancer drugs based on the affected organs’ location and/or the appearance and activity of cancer cells when viewed under a microscope. Some companies offer commercial tests on surgically removed tumours using a small number of anticancer drugs. But Anirban Maitra, MBBS, professor of pathology and oncology at the Johns Hopkins University School of Medicine, says the tissue samples used in such tests may have been injured by anaesthetic drugs or shipping to a lab, compromising test results.
By contrast, he says ‘our cell lines better and more accurately represent the tumours, and can be tested against any drug library in the world to see if the cancer is responsive.’
The Johns Hopkins scientists developed their test-worthy cell lines by injecting human pancreatic and ovarian tumour cells into mice genetically engineered to favour tumour growth. Once tumours grew to one centimetre in diameter in the mice, the scientists transferred the tumours to culture flasks for additional studies and tests with anticancer drugs.
In one experiment, they successfully pinpointed the two anticancer drugs from among more than 3,000 that were the most effective in killing cells in one of the pancreatic cancer cell lines
The new method was designed to overcome one of the central problems of growing human tumour cell lines in a laboratory dish — namely the tendency of non-cancerous cells in a tumour to overgrow cancerous ones, says James Eshleman, M.D., Ph.D., professor of pathology and oncology and associate director of the Molecular Diagnostics Laboratory at Johns Hopkins. As a consequence, it has not been possible to conventionally grow cell lines for some cancers. Still other cell lines, Eshleman says, don’t reflect the full spectrum of disease.
To solve the problem of overcrowding by non-cancerous cells, Maitra and Eshleman bred genetically engineered mice that replace the non-cancerous cells with mouse cells that can be destroyed by chemicals, leaving pure human tumour cells for study.
‘Our technique allows us to produce cell lines where they don’t now exist, where more lines are needed, or where there is a particularly rare or biologically distinctive patient we want to study,’ says Eshleman. John Hopkin’s Hospital

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