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Archive for category: E-News

E-News

Scientists identify marker for myeloid-derived suppressor cells

, 26 August 2020/in E-News /by 3wmedia

Myeloid-derived suppressor cells (MDSCs) are a population of immune cells that have been implicated in tumour resistance to various types of cancer treatment, including targeted therapies, chemotherapy and immunotherapy. Polymorphonuclear (PMN) cells represent the largest population of MDSCs. However, fully understanding the biology and clinical importance of these cells has been hampered by a lack of markers that set them apart from normal neutrophils.

Now, scientists at The Wistar Institute have identified a marker that distinguishes PMN-MDSCs from neutrophils in the blood of patients with a variety of cancers. Study results showed that higher numbers of cells positive for the marker were associated with larger tumour size.

‘Before we started this work, the only way to isolate PMN-MDSCs was by density centrifugation of blood because they could not be properly identified in tumour tissue,’ said Dmitry I. Gabrilovich, M.D., Ph.D., Christopher M. Davis Professor and professor and program leader of the Translational Tumor Immunology program at Wistar, and senior author of the study. ‘Identifying a marker for PMN-MDSCs will allow us to study these cells in much more depth. In addition, if our clinical results are verified in larger studies, the marker could also be used to help physicians and patients make informed treatment decisions and, ultimately, it could be exploited to target PMN-MDSCs for therapeutic benefit.’

MDSCs are potent suppressors of immune responses. They naturally regulate immune responses in healthy individuals, but the population rapidly expands in patients with cancer, and the presence of these cells has been associated with poor patient outcomes. One of the few ways to know for sure that cells are MDSCs is by showing that they suppress immune responses in vitro.

Gabrilovich and colleagues used whole-genome analysis to compare the genes expressed by PMN-MDSCs and neutrophils from the blood of patients with non-small cell lung cancer and head and neck cancer. The researchers focused on the genes expressed at higher levels in PMN-MDSCs compared with neutrophils, in particular those genes that encoded proteins detectable on the surface of cells. This led them to the protein LOX-1, which was almost undetectable on the surface of neutrophils but detectable on the surface of about one-third of PMN-MDSCs.

When they tested the ability of LOX-1-positive and LOX-1-negative cells to suppress immune responses in vitro only the LOX-1-positive cells had this function. The results showed that LOX-1 was a marker of PMN-MDSCs.

Gabrilovich and colleagues speculated that the number of LOX-1-positive PMN-MDSCs in blood and tumour samples from patients with cancer might help predict disease severity and outcome. They had samples from only a few patients with non-small cell lung cancer to study, but found that patients with larger tumours had higher numbers of these cells in both blood and tumour samples.

‘Now that we have a specific marker for MDSCs, we can begin to ask new questions about the biology of these cells and their clinical significance,’ added Gabrilovich.

EurekAlert www.eurekalert.org/pub_releases/2016-08/twi-wsi080316.php

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Researcher help build a biomedical knowledgebase

, 26 August 2020/in E-News /by 3wmedia

Imagine attempting to bake a cake—except you have to go to different stores for flour and milk, drive across town to get eggs and call a friend to borrow a cake pan.

This is the kind of disjointed scenario many scientists face when they attempt to gather data scattered across small databases and hard-to-search PDF files.

“It’s not that the data doesn’t exist,” said Andrew Su, associate professor at The Scripps Research Institute (TSRI). “The data just isn’t stored in a way that scientists can easily access.”

“Open data is vital for progress and research,” added TSRI Assistant Professor of Molecular and Experimental Medicine Ben Good. “We need to break down those barriers.”

To solve this problem, Su, Good and their colleagues at TSRI have integrated biomedical data into Wikidata, a public, editable database where researchers can easily link genes, proteins and more.

Technological breakthroughs in the last 10 years have led to rapid increases in the volume and rate of biomedical research, which in turn has led to a rapid growth in biomedical knowledge. However, this knowledge is currently fragmented across countless resources—from online databases to supplementary data files to individual facts in individual papers.

“As a research community, we spend a lot of time searching for good resources and trying to link them together,” said TSRI Research Associate Tim Putman, who was first author of one of the studies. “It’s cringeworthy.”

Even when databases are open to the public, current knowledge isn’t always organized in a uniform way, Putman explained.

Rather than leave each research group to tackle data integration individually, Wikidata offers a new model for organizing all this information. Built on the same principles as Wikipedia, Wikidata enables anyone to add new information to an open community database.

While other Wikidata editors have added information on millions of items as diverse as works of art to U.S. cities, the TSRI team has focused on adding information on biomedical concepts.

TSRI Research Associate Sebastian Burgstaller-Muehlbacher, first author on one study, added data on all human and mouse genes, all human diseases and all drugs approved by the U.S. Food and Drug Administration.

Putman then extended Wikidata with a focus on microbial genomes. With all this information collected in one system, researchers can more easily spot connections between diseases, pathogens and biological processes. As an example, Putman used the model to show that other microorganisms in the body can influence chlamydia infections.

As a proof of concept, Putman led the development of a genome browser based on Wikidata. Rather than having to develop one browser for every sequenced genome, this genome browser allows users to browse any genome that has been loaded into Wikidata.

“You can zoom in on a gene, click on it and the sequence will pop up,” said Good. The genome browser will then link back to the original Wikidata entry.

In the end, the researchers plan to have a comprehensive, uniform database that is easy to search and open to anyone who wants to add data and link related concepts.

“We think this data should all be open,” said Su. “This just makes intuitive sense.” The Scripps Research Institute

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New genetic links for heart disease risk factors identified

, 26 August 2020/in E-News /by 3wmedia

Scientists from the Welcome Trust Sanger Institute and their collaborators have discovered 17 rare human genetic variations associated with risk factors for diseases such as heart disease and diabetes.

The research shows how large-scale genomic datasets can be used to help identify potential novel biological targets for studying cardiovascular and other diseases.

Genetics have been implicated in cardiovascular and blood diseases for some time, however as these are complex diseases, it is extremely difficult to find specific genetic causes. In this study, scientists studied the genomes of almost 36,000 healthy people with European ancestry, looking for rare genetic links to 20 known risk factors for disease, such as raised levels of cholesterol or haemoglobin in the blood.

Two previous large-scale projects provided the whole genome sequences needed: the UK10K project  – a study of the genetic code of 10,000 people that aims to better understand links between rare genetic variations and disease; and the 1000 genome project. From this data, the scientists created a resource called a dense imputation panel, which is freely accessible to the scientific community. The panel holds so much detail that it can fill in the gaps or ‘impute’ data missing from lower resolution genetic studies.

The level of detail the imputation panel provides enabled the scientists to look at specific disease risk factors, and find 17 new genetic variants. Of these, 16 would have been extremely difficult to find without the imputation panel data.

“The dense imputation panel used in this study allowed us to search for genetic variations that are much less frequent than ever before, but that individually explain a greater genetic risk.  As efforts continue to characterise the genetic underpinnings of complex diseases, the methods we have developed in this study are expected to enable the next wave of discoveries of what causes these diseases, and how we might develop new treatments.”

The researchers then applied an analytical technique called fine-mapping to study hundreds of regions of the human genome that contain genetic risk factors for cardiometabolic disease. For 59 regions, they were able to narrow down the most likely genetic causes to small sets of genetic variants. Combining this fine mapping technique with biological data drilled it down even further and provided additional functional insight into the underlying biology.

Sanger Trust www.sanger.ac.uk/news/view/new-genetic-links-heart-disease-risk-factors-identified

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New gene variants present in 3 percent of all ALS patients

, 26 August 2020/in E-News /by 3wmedia

Variations in a gene with multiple functions in neurons are present in approximately 3 percent of all cases of ALS in North American and European populations, both sporadic and familial, making it one of the most common genetic causes of the disease, according to a paper. Led by John Landers, PhD, professor of neurology at UMass Medical School and Jan Veldink, PhD, at University Medical Center Utrecht in the Netherlands, the research was supported by The ALS Association through Project MinE, an international collaboration for gene discovery in ALS, and funded through ALS Ice Bucket donations.

ALS (amyotrophic lateral sclerosis) is a progressive neurodegenerative disease that affects neurons in the brain and the spinal cord. Eventually, people with ALS lose the ability to initiate and control muscle movement, which often leads to total paralysis and death within two to five years of diagnosis. While 10 percent of ALS is familial, meaning it’s genetic, the other 90 percent of ALS cases are considered sporadic, or without a family history. However, it’s very likely that genetics contribute, directly or indirectly, to a much larger percentage of ALS cases.

“The discovery of NEK1 highlights the value of big data in ALS research,” said Lucie Bruijn, PhD, MBA, of The ALS Association. “The sophisticated gene analysis that led to this finding was only possible because of the large number of ALS samples available. The ALS Ice Bucket Challenge enabled The ALS Association to invest in Project MinE’s work to create large biorepositories of ALS biosamples that are designed to allow exactly this kind of research and to produce exactly this kind of result.”

The new gene, called NEK1, was discovered through a genome-wide search for ALS risk genes in more than 1,000 ALS families, and was independently found through different means in an isolated population in the Netherlands. Further analysis in more than 13,000 sporadic ALS individuals compared to controls again revealed the overrepresentation of variants in the same gene. The variations discovered in the gene sequence are predicted to lead to a loss of function of the gene. NEK1 is known to have multiple roles in neurons, including maintenance of the cytoskeleton that gives the neuron its shape and promotes transport within the neuron. In addition, NEK1 has roles in regulating the membrane of the mitochondrion, which supplies energy to neurons, and in repairing DNA. Disruption of each of these functions through other means has been linked to increased risk of ALS.

Understanding the role of NEK1 in disease will provide an important new target for therapy development. The ALS Association is currently funding Landers and Catherine Lutz, PhD, senior research scientist at the Jackson Laboratories in Bar Harbour, Maine, to develop novel mouse models to better understand the consequences of the loss of the protein’s function for the ALS disease process. They will provide rapid access to these models for the broader ALS research community as soon as they are generated. These tools are important for ALS drug development.

UMass Medical School www.umassmed.edu/news/news-archives/2016/07/new-gene-variants-present-in-3-percent-of-all-als-patients/

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Elevated levels of inflammation biomarker offsets benefits of good cholesterol

, 26 August 2020/in E-News /by 3wmedia

People with high levels of good cholesterol, or high-density lipoprotein, are not as safe from heart disease when high levels of a newly identified biomarker of inflammation in the arteries are also found in their bloodstream, according to a new study.

In the study of nearly 3,000 patients, researchers from the Intermountain Medical Center Heart Institute in Salt Lake City discovered that the presence of high levels of the biomarker glycoprotein acetylation, or GlycA, was associated with an increased risk of heart attack or stroke.

Inflammation of the artery walls is a contributing factor to heart attack and stroke because it increases the likelihood that plaque on the arterial walls will rupture, induce clot formation and block blood flow.

“We already know that HDL provides an anti-inflammatory effect on the arteries,” said Brent Muhlestein, MD, co-director of cardiovascular research at the Intermountain Medical Center Heart Institute. “But our research suggests there’s an interaction between GlycA and small HDL particles that reduces the anti-inflammatory capabilities of HDL and increases a person’s chances of having a heart attack or stroke.”

Using a test developed by LipoScience known as NMR spectroscopy, researchers measured lipoprotein particles and GlycA in 2,848 patients whose average age was 63 years old. Sixty-six percent of the patients were male and 65 percent had coronary artery disease.

“The results of our study reinforce the importance of the recommendations we offer to our patients working to reduce inflammation in their arteries by exercising regularly and eating heart-healthy foods,” said Dr. Muhlestein. “Some ways of increasing the HDL levels that will provide the anti-inflammatory protection include eating foods higher in Omega 3s and following the Mediterranean diet, which revolves around plant-based foods, healthy fats, and limited amounts of salt and red meat.”

Historically, C-reactive protein has been used as an indicator of inflammation in the body, and is predictive of future heart-related adverse events. Now, GlycA, a marker of inflammation identified through NMR, appears to show the same predictive ability.

However, researchers are currently seeking to determine if C-reactive protein and GlycA are completely independent of each other in terms of their impact on inflammation and heart disease.

“GlycA is a new particle we didn’t know much about, but now that we know there are epidemiologic associations, we need to look at additional ways to evaluate and understand the way it functions and interacts in the bloodstream,” said Dr. Muhlestein. Intermountain Medical Center Heart Institute

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Two genetic markers that predict malaria treatment failure found

, 26 August 2020/in E-News /by 3wmedia

A frontline malaria treatment that combines fast-acting dihydroartemisinin with long-lasting piperaquine is quickly losing power in Cambodia due to the rapid spread of drug-resistant parasites. The presence of piperaquine-resistant malaria parasites in several Cambodian provinces was confirmed earlier this year by National Institutes of Health researchers and their colleagues. Now, by comparing the complete genomes of 297 parasites isolated from Cambodian malaria patients to a reference malaria parasite genome, the team has identified two genetic markers that are strongly associated with the parasites’ ability to resist piperaquine.

A simple test, performed after collecting blood from a finger pinprick, can show whether a malaria patient has parasites with the genetic markers. If so, dihydroartemisinin-piperaquine therapy is likely to fail, say the study authors, and an alternative drug combination (artesunate-mefloquine) should be used. Information about the distribution of these drug resistance markers is being used by officials in Cambodia and neighbouring countries to map the extent and spread of piperaquine resistance and to help guide region-wide malaria treatment approaches.

National Institute of Allergy and Infectious Diseases (NIAID) scientist Rick Fairhurst, M.D., Ph.D., and Roberto Amato, Ph.D., of the Wellcome Trust Sanger Institute (WTSI), Cambridge, UK, led the research team. The first marker they identified is a change of one subunit in a gene on the parasite’s chromosome 13. Parasites with this genetic change are much more likely to be resistant to piperaquine than parasites without it. The marker, while associated with drug resistance, likely does not play a functional role in enabling parasites to resist piperaquine, according to the researchers. In contrast, the second resistance marker identified by the investigators may have such a role. That marker is an increased number of copies of two genes (plasmepsin II and plasmepsin III) in those parasites that resist piperaquine. Malaria parasites use plasmepsins to help them digest human blood and, although the exact mechanism of action of piperaquine is not known, it is believed that the drug targets plasmepsins.

Parasites may react to piperaquine by increasing plasmepsin production, and any parasites with extra copies of the plasmepsin II and III genes may be better able to withstand piperaquine treatment. Of note, parasites with increased piperaquine resistance appear to have increased susceptibility to the malaria drug mefloquine. This observation hints at the possibility of devising malaria treatment regimens that combine three or more drugs to exploit opposing resistance-susceptibility attributes.

National Institute of Healthwww.niaid.nih.gov/news-events/two-genetic-markers-predict-malaria-treatment-failure-found

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Labquality Days 2017

, 26 August 2020/in E-News /by 3wmedia

The International Congress on Quality in Laboratory Medicine will be held at Messukeskus, Expo and Convention Centre Helsinki on 9th-10th of February 2017. The annual congress is one of the largest events in Scandinavia focused on quality and laboratory medicine.

The congress inspires medical doctors, pathologists, clinical chemists, biomedical laboratory scientists, medical laboratory experts, managers, quality managers and point-of-care supervisors from the healthcare sector.

The 2017 Congress themes are Impact of Total Quality Management (TQM) and Evidence-Based Laboratory Medicine (EBLM).

Total Quality Management (TQM) is an already more than 60-year old concept that has steadily become more popular in healthcare settings. The idea is to develop a culture which aims at providing patients and customers with products and services that satisfy their needs. In Total Quality Management both management and employees are involved in the continuous improvement of services. It is a combination of quality and management tools to reduce wasteful processes and to avoid errors. In healthcare TQM outcomes are measured by patient health and customer satisfaction.
For healthcare organizations TQM means also a continuous learning process and its base is quantitative, thus being closely related to evidence-based medicine.
Labquality Days 2017 will bring distinguished international speakers together who will highlight the importance of management’s involvement in continuous process improvement. The speakers will also show some concrete examples and tools of TQM in smaller healthcare organizations and in large enterprises.

Evidence-Based Laboratory Medicine (EBLM) is the second theme of the 2017 Congress.
How important are laboratory results in clinical decision making? Are they as valuable in acute myocardial infarction as for a patient suffering from a common cold? Where is the evidence – and do we have enough data to support better patient outcomes?
Choosing the right laboratory test at the right time has become increasingly important particularly in improving and speeding up the diagnostic process and reducing diagnostic errors and costs. The speakers will discuss whether we have enough up-to-date evidence to evaluate the importance of laboratory results, though more controlled well-designed studies are needed.

The International Congress on Quality in Laboratory Medicine will gather leading international speakers and opinion leaders together. The programme consists of scientific lectures and panel discussions. During the congress, participants have the opportunity to meet colleagues, share ideas and experience the extensive clinical laboratory exhibition.

www.labqualitydays.com
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Siemens Healthcare becomes Siemens Healthineers

, 26 August 2020/in E-News /by 3wmedia

In early May Siemens Healthcare unveiled its new brand name Siemens Healthineers. The new brand underlines Siemens Healthcare’s pioneering spirit and its engineering expertise in the healthcare industry. It is meant to describe the healthcare organization and its people – the people accompanying, serving and inspiring customers – the people behind outstanding products and solutions. As part of its Vision 2020 strategy Siemens AG announced nearly two years ago that its healthcare business would be separately managed as a company within the company with a new organizational setup. Siemens Healthineers will continue to strengthen its leading portfolio across the medical imaging and laboratory diagnostics business while adding new offerings such as managed services, consulting and digital services as well as further technologies in the growing market for therapeutic and molecular diagnostics.

www.healthcare.siemens.com
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Coris BioConcept : 20 years of innovation and success

, 26 August 2020/in E-News /by 3wmedia

Coris BioConcept develops and manufactures immunochromatographic tests allowing fast and accurate diagnosis of infectious diseases. The company was founded by Dr Thierry Leclipteux in 1996, when it was still possible to start a biotech company from scratch. After a lot of determination and support, the first employees were hired only four years later. That moment marked the take-off of the company. Today, 20 years later, Dr Leclipteux and his 30 employees are proud to look back and see how big and  healthy the growth has been. Those 20 years were fueled by the ambition of a never-ending innovation spirit and a worldwide expansion.
Today, Coris BioConcept is a major player in the diagnostic field offering a wide range of effective solutions for the diagnosis  of viruses, bacteria and parasites. When the company started, only two products were available: the Rotavirus and Adenovirus detection tests. Still in the top-10 selling products, these two tests are now included in a total of 50 different products available, all designed and developed in-house. This success could not be reached without continuous investment in research and development. Today, the R&D department represents 40% of the entire working team, which is quite atypical for an SME.
Since the beginning, Coris BioConcept has been increasing and sharing its technical know-how by participating in multiple national and international scientific projects, mainly financed within FP6, FP7 and H2020 framework programmes. Those collaborations combined with the product distribution in more than 60 countries all over the world position Coris BioConcept as an essential player in the diagnostic field. This global involvement motivates the company to set its goals in the development of solutions to major health concerns, such as the fight against antibiotic resistance. This main issue is dramatically evolving in the context of hospital-acquired bacterial infections. Faster diagnostic solutions are required to help clinicians rapidly adopt the most accurate antibiotic treatment. The new “RESIST” range of immunochromatography tests recently launched fulfills that purpose. The NDM-, OXA-48- and KPC-K-SeT allow a precise identification of carbapenem resistant bacteria in less time than conventional laboratory methods. Other additional tests are already under development to offer the most exhaustive set of antibiotic resistances detections.
Coris BioConcept’s challenges for the future have never been that high to maintain its position as an international standard in the infectious diagnostic field. However the company keeps in mind its core values of harmony, rigour, respect and commitment that defines its way of life.

www.corisbio.com

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Discovery of infants’ airway microbiomes may help predict lung disease

, 26 August 2020/in E-News /by 3wmedia

In contrast to the general belief that the airways of an infant are sterile until after birth, University of Alabama at Birmingham researchers and colleagues have found that the infant airway is already colonised with bacteria or bacterial DNA when a baby is born — and this is true for infants born as early as 24 weeks gestation.

How microbes get into the airways and the purpose of this pre-birth colonisation are still unclear, but the pattern of colonisation appears to have an important link to later severe neonatal lung disease.

An early microbial imbalance, or dysbiosis, is predictive for the development of bronchopulmonary dysplasia, or BPD, a chronic lung disease of prematurity. The extremely low birth-weight, or ELBW, infants in this study had an average birth weight of 1 pound, 8 ounces. Researchers found that the ELBW infants who went on to develop life-threatening BPD showed abnormal microbial colonisation patterns at birth, as compared to pre-term infants who did not get BPD.

“Right at birth, your respiratory microbiome can possibly predict your risk for BPD,” said Charitharth Vivek Lal, M.D., assistant professor in the UAB Pediatrics Division of Neonatology and the lead investigator of this study.
Extremely premature infants are at risk for BPD, which is the most common lung pathology of these tiny infants and a significant cause of morbidity, mortality and health care expenditures. Adults and children who had BPD as infants have lungs that failed to develop properly and are more prone to worse lung function, asthma, lung infections and pulmonary hypertension.

The researchers also looked at the airway microbiomes of 18 ELBW infants with established BPD and found that their microbiomes had a decreased diversity of types of microbes, and the pattern was very different from those of ELBW infants shortly after birth or full-term infants at birth.

As to specific groups of microbes, the phylum Proteobacteria, which includes bacteria like E. coli, appeared to be involved in BPD pathology, and the genus Lactobaccillus, part of the phylum Firmicutes, appeared to be involved in disease protection.

Lal and colleagues found decreased Lactobacillus abundance in the airway microbiomes of 10 infants born to mothers who had chorioamnionitis — an infection of the membranes of the placenta and an independent risk factor for BPD — as well as decreased Lactobacillus abundance at birth in the airways of the BPD-predisposed, ELBW infants, as compared to BPD-resistant infants. Research elsewhere has suggested a beneficial role for Lactobacillus against airway diseases and for lung development.

“I predict that researchers will study the use of respiratory probiotics, and the role of the gut-lung microbiome axis in the future,” Lal said.

For five ELBW infants who later developed BPD, the researchers collected periodic airway microbiome samples from birth through 9 weeks and saw extremely similar patterns of change in the microbiomes over time.

As for the source of the microbes, Lal and colleagues wrote, “As it is commonly believed that colonization of neonates originates in the birth canal, we were surprised to find that the airway microbiome of vaginally delivered and caesarean section-delivered neonates were similar, which suggests that the microbial DNA in the airways is probably transplacentally derived, consistent with reports that the placenta has a rich microbiome.”

The researchers speculate that this transmission of bacteria or bacterial DNA to the in-utero infant could be via blood or amniotic fluid.

University of Alabama at Birmingham www.uab.edu/news/innovation/item/7505-discovery-of-infants-airway-microbiomes-may-help-predict-lung-disease

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