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Archive for category: E-News

E-News

Genetic analysis can improve depression therapy

, 26 August 2020/in E-News /by 3wmedia

The failure of drugs such as SSRIs, used to treat depression, can be a result of genetic variations in patients. Variations within the gene that encodes the CYP2C19 enzyme results in extreme differences in the levels of escitalopram achieved in patients. Prescribing the dose of escitalopram based on a patient’s specific genetic constitution would greatly improve therapeutic outcomes. The study was conducted at Karolinska Institutet in association with researchers at Diakonhjemmet Hospital in Oslo.
Pharmaceutical treatment of depression commonly makes use of selective serotonin reuptake inhibitors (SSRIs) of which escitalopram is the most frequently administered clinically. However, escitalopram therapy is currently limited by the fact that some patients do not respond well to the drug, while others develop adverse reactions requiring discontinuation of treatment.
In order to individualise drug therapy, researchers are attempting to establish genetic biomarkers that can predict an individual’s response to drugs. In a recent study, it was discovered that variation in the gene encoding the enzyme responsible for escitalopram metabolism (CYP2C19) is very important in this respect. Individuals with a variant of the gene promoting increased enzyme expression had blood levels of escitalopram too low to impact the depression symptoms, whereas patients with a defective CYP2C19 gene reached drug levels which were too high. Overall, one third of the 2,087 study participants achieved escitalopram blood levels that were either too high or too low.
Interestingly, the researchers found that 30 per cent of the patients carrying gene variants causing excessive or inadequate enzyme levels switched to other drugs within one year, in contrast with only 10 to 12 per cent of patients carrying the common gene.
“Our study shows that genotyping of CYP2C19 could be of considerable clinical value in individualising doses of escitalopram so that a better all-round antidepressive effect could be achieved for the patients,” says Professor Magnus Ingelman-Sundberg at Karolinska Institutet’s Department of Physiology and Pharmacology who led the study together with Professor Espen Molden. “Because CYP2C19 is involved in the metabolism of many different SSRIs, the finding is also applicable to other types of antidepressants.”
Karolinska Instituteki.se/en/news/genetic-analysis-can-improve-depression-therapy

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Single-cell diagnostics for breast cancer

, 26 August 2020/in E-News /by 3wmedia

Women diagnosed with breast cancer may benefit from having the molecular subtype of different cells within their tumours identified, argue two researchers. While breast cancer is often treated as a whole, they discuss the growing consensus that cancer cells within a tumour can have multiple origins and respond variably to treatment. The authors advocate for the development of more accurate diagnostic tests to capture molecular irregularities between tumour cells.
"Breast tumours are moving targets because they are really versatile," says Jun-Lin Guan, Francis Brunning Professor and Chair of the Department of Cancer at the University of Cincinnati College of Medicine and member of the Cincinnati Cancer Center and UC Cancer Institute, who co-authored the paper with postdoctoral fellow Syn Kok Yeo. "If you use a treatment that’s targeting one subtype, which kills one type of breast cancer, often the other kind will actually expand. That defeats the purpose of treatment."
Breast cancer cells differ by the types of molecular markers, some of which are found on their surface, which physicians can test to understand the characteristics of a patient’s cancer and devise the best treatment strategy. For example, women with the HER2+ breast cancer subtype generally have a poorer prognosis than those with the luminal A tumours because of how quickly the cells multiply. Often tumour samples are taken and screened for the most common markers present, but Guan and Yeo’s analysis of human and rodent studies raises the possibility that overlapping subtypes are being missed.
They advocate for diagnostic testing to be combined with single-cell technologies, in which individual cells, rather than a collection, are screened for molecular markers. However, as they currently exist, single-cell approaches are expensive and require specialized expertise, so they would not be realistic for regular patient screenings.
"What we’re talking about is still not widely used in practice–there’s a gap between basic cancer research and the clinics that do the diagnoses," Guan says. "However, single-cell technologies are advancing very quickly, so it’s possible that we can see them being used in the near future."
The researchers put forward that the co-existence of distinct breast cancer subtypes within tumors happens because a fraction of breast cancer cells retain many stem cell-like qualities and thus reserve the capability to easily change. This has been observed in human cancer cells and in rodent studies but has yet to be confirmed in patients. Single-cell analysis could assess whether this problem is common or rare in humans.
EurekAlert
www.eurekalert.org/pub_releases/2017-10/cp-raf101917.php

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High-sensitivity troponin test reduces risk of future heart attack

, 26 August 2020/in E-News /by 3wmedia

A blood test that measures the presence of heart-specific proteins called troponins is used by emergency clinics to diagnose myocardial infarction in patients with chest pain. For the past few years a newer laboratory method has been used at most hospitals in Sweden that is ten times more sensitive than the conventional troponin test. The high-sensitivity troponin test can discover heart attacks earlier so that treatment can commence, which is thought to improve the patients’ prognosis.
"But there is a lack of larger studies examining whether the high-sensitivity troponin test is of any significance for patients with newly diagnosed myocardial infarction in terms of survival or the risk of another heart attack," says study leader Dr. Martin Holzmann, associate professor of epidemiology at Karolinska Institutet’s Department of Medicine in Solna and physician at Karolinska University Hospital.
The study included all patients in Sweden who had had their first heart attack between 2009 and 2013. This gave a study population of almost 88,000 patients, 40,000 of whom had been diagnosed using the high-sensitivity troponin test and just over 47,000 using the conventional troponin test.
The researchers found that five per cent more myocardial infarctions were being diagnosed in hospitals that used the high-sensitivity troponin test. A year after the heart attack was registered there was no difference in mortality between the two groups, although the number of new heart attacks was lower in the group that had been diagnosed using the high-sensitivity troponin test.
"This surprised us," says Dr. Holzmann. "We didn’t think that the more sensitive test would affect the risk of future heart attacks."
The use of coronary angiography and balloon angioplasty was 16 and 13 per cent more common, respectively in the patients diagnosed with the high-sensitivity troponin test. In the USA, where the new test was not approved until 2017, there are fears that the more sensitive methods can entail a large increase in the number of examinations with no benefit to the patients.
"The increase we observed in our study was less than expected, which means that the high-sensitivity troponin test has enabled doctors to single out the patients who benefit from such intervention. We found no differences in medication between the two groups, so the differences in prognosis with fewer new heart attacks could be attributed to the fact that more coronary angiography and balloon dilation procedures have been performed on the right patients," says Dr. Holzmann, who also believes that the study supports the idea that the handful of hospitals in Sweden that still do not use the high-sensitivity troponin test should start to do so.

MedicalXpress
medicalxpress.com/news/2018-06-high-sensitivity-troponin-future-heart.html

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Pap test fluids used in gene-based screening test for two Gyn cancers

, 26 August 2020/in E-News /by 3wmedia

Cervical fluid samples gathered during routine Papanicolaou (Pap) tests are the basis of a new screening test for endometrial and ovarian cancers developed by researchers at the Johns Hopkins Kimmel Cancer Center.
PapSEEK detects mutations in DNA that have been identified for specific cancers sooner. Earlier detection of cancer could lead to earlier treatment and potentially better outcomes for patients.
The test uses cervical fluid samples to look for mutations in 18 genes, which are highly or commonly mutated in endometrial or ovarian cancers, and aneuploidy, the presence of abnormal numbers of chromosomes in cells. The researchers said their results showed the potential for mutation-based diagnostics to detect endometrial and ovarian cancers earlier.
“More than 86,000 U.S. cases of endometrial and ovarian cancer were diagnosed in 2017. Treatment often involves surgery and, in some cases, chemotherapy or radiation,” said Amanda Nickles Fader, M.D., director of the Johns Hopkins Kelly Gynecological Oncology Service, Department of Gynecology and Obstetrics, and a corresponding author on this study.
“Additionally for young women who are diagnosed, loss of fertility is common. If we could detect the cancer earlier using a test like PapSEEK, the potential to achieve more cures and preserve fertility in select women could be realized.”
Most cancers are curable if they are detected early, and the researchers are exploring ways to use cancer gene discoveries to develop cancer screening tests to improve cancer survival. They announced the development of CancerSEEK, a single blood test that screens for eight cancer types, and UroSEEK, a test that uses urine to detect for bladder and upper tract urothelial cancer.
PapSEEK targets the most common and most lethal gynaecological cancers, endometrial and ovarian cancer. There is currently no screening test for endometrial cancer and, due to the obesity epidemic, it is on the rise, particularly in younger women.
“Gynaecological cancers are responsible for approximately 25,000 deaths per year and are the third leading cause of cancer-related mortality,” said Nickolas Papadopoulos, Ph.D., a senior author and an investigator at the Ludwig Center at Johns Hopkins. “Most of the deaths are caused by tumours that metastasize prior to the onset of symptoms. With PapSEEK, we are aiming to detect these cancers early when they are most curable.”
Since fluid from the Pap test occasionally contains cells from the endometrium or ovaries, researchers found they could detect cancer cells from these organs that are present in the fluid.
John Hopkins Kimmel Cancer Centerwww.hopkinsmedicine.org/news/media/releases/pap_test_fluids_used_in_gene_based_screening_test_for_two_gyn_cancers

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EKF procalcitonin assay validated for Beckman AU chemistry analysers

, 26 August 2020/in E-News /by 3wmedia

EKF Diagnostics announces that its Stanbio Chemistry Procalcitonin (PCT) LiquiColor® assay has been FDA cleared and validated for use on Beckman AU 480, 680 and 5800 clinical chemistry analysers.  EKF is pleased to confirm the immediate availability of a user-defined application (UDA) for running this 10-minute test for bacterial infection and sepsis on these Beckman AU analysers.
PCT is a widely accepted marker for use in conjunction with other tests to quickly identify sepsis and monitor progression/severity over time. EKF’s PCT test is designed to be used on an open channel of most main brand clinical chemistry analysers, including Roche Cobas, Abbott Architect and Hitachi systems. Therefore, the availability of the user-defined  application (UDA) on Beckman AU analysers further increases the breadth of application of the LiquiColor PCT assay.   
Trevor McCarthy, Sales Manager, EKF Central Laboratory Products, EMEA/APAC said, “The news regarding the FDA clearance and Beckman AU analyser validated application for the PCT LiquiColor assay will bolster trust in the quality and reliability of our product.  Having EKF’s PCT assay validated on Beckman AU chemistry analysers allows us to provide a competitive alternative product for hospital labs and should open up new markets and opportunities for us to support improved and early detection of sepsis.”
The cost-effective, immunoturbidimetric assay, which features the use of monoclonal antibodies coated to latex particles, can determine PCT from just 20µL of serum and plasma specimens. Conveniently, the reagent set requires no reagent preparation and is designed to be used on open chemistry systems. It is available in a liquid-stable format, meaning that it can remain on-board a clinical chemistry analyser for up to four weeks.
PCT is a quick and effective adjunct marker in sepsis diagnosis which helps to differentiate between viral and bacterial infections, so enabling early administration of antimicrobial therapy. It is an important test, as the Surviving Sepsis Campaign (SSC) estimates that the incidence of sepsis is 3 per 1,000 worldwide. There has been a steady rise in the number of patients with sepsis; globally there are now over 18 million cases per year. Due to its high mortality, sepsis is a primary cause of death, accounting for over 60% of deaths per year in the developing world. It kills over 6 million new-borns and children each year and there are over 100,000 cases of maternal sepsis.
In addition to improving sepsis survival rates and improving antibiotic stewardship, studies have also shown that PCT testing reduces hospital costs and length of stay. For example, a recent large cohort study examined whether PCT testing helps to more effectively manage sepsis care. The study found that use of PCT testing on day one of admission into the ICU lead to an average of 1.2 fewer hospital days than patients who were not screened and saved an average of $2,759 (€2,337) on their total hospital costs. www.ekfdiagnostics.com

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New methods for genetics analyses and diagnosis of inflammatory bowel disease

, 26 August 2020/in E-News /by 3wmedia

The two most common types of inflammatory bowel diseases are ulcerous colitis and Crohn’s disease. These are diagnosed by camera inside the gut, and by investigating small samples of the gut (biopsies). The diagnosis is often difficult, and if the wrong diagnosis is made, there may be severe consequences for the patients, because the treatments and medications are different between the two diseases.
The development of new and improved diagnostic methods is therefore important. The Sandelin group at Department of Biology/BRIC, University of Copenhagen has, in collaboration with clinicians from Herlev and Hvidovre hospitals and scientists from Roskilde University and the Technical University of Denmark, made new discoveries may contribute to improved methods for diagnosis.
– We do not know the molecular cause of these diseases. Much of what we know comes from genetic studies, where several key genes have been identified. However, 70% of genetic mutations that are linked to the diseases are located outside of genes that code for proteins. We believe that many of these mutations have an effect of the regulation of the genes, and thereby the disease, says Prof Sandelin who led the study, says Albin Sandelin, professor at Department of Biology, University of Copenhagen.
The scientists used a state-of-the-art method to map regulatory regions and their activity in patients with ulcerous colitis or Crohn’s disease and compared these with control subjects. They found that mutations associated to the disease were often located within regulatory regions active in the disease. This information is important for understanding the effect of such mutations. By combining these data with computer-based models and nano-fluidics technology, they could identify 35 regulatory regions whose activity could distinguish ulcerous colitis, Crohn’s disease and control subjects with high accuracy. These findings may open new avenues for new and improved diagnosis methods for inflammatory disease.

EurekAlertwww.eurekalert.org/pub_releases/2018-04/fos–nmf042618.php

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Medical researchers find protein that marks difference between cancer and non-cancer cells

, 26 August 2020/in E-News /by 3wmedia

A discovery sheds light on how cancerous cells differ from healthy ones, and could lead to the development of new strategies for therapeutic intervention for difficult-to-treat cancers in the future.
An international team of investigators found a “stop sign”—a modified protein researchers named a PIP-stop—inside cells that are overused by cancerous cells that effectively prevents healthy ones from sorting material in the way they were designed to.
“We have discovered that breast cancer, leukaemia, lymphoma and neuroblastoma cells have too many PIP-stops. This would upset protein function, and opens up a new avenue for developing drugs that block PIP-stop formation by kinase enzymes,” said Michael Overduin, a University of Alberta cancer researcher and professor of biochemistry, who led the research project.
The team named the modification a PIP-stop because it stops proteins from interacting with lipid molecules called PIP.
Before making their discovery, the researchers first solved the 3-D structure of a sorting nexin protein, which is key to sorting proteins to their proper locations within the cell. Powerful magnets in the U.K. and in the National High Field Nuclear Magnetic Resonance Centre (NANUC), Canada’s national magnet lab based in Edmonton, were then used to detect signals from within individual atoms within the protein structure.
By focusing on the protein structure, the team was able to discover the PIP-stop and see how it blocked the protein’s function. The PIP-stop is a phosphate which is added to the protein surface that binds the PIP lipid, and normally controls how proteins attach to membranes.
Samples from cancer patients have too many PIP-stops, which could lead to the unregulated growth seen in tumour cells. Similar PIP-stops were found to be overused in a large number of other proteins involved in other cancer types, where they could also influence tumour growth.
“Our goal now is to design inhibitors for the overactive kinases that create PIP-stops, and to use this information to design drug molecules that block the progression of cancers, particularly those which lack effective treatments,” said Overduin.
University of Alberta Faculty of Medicine & Dentistrywww.folio.ca/medical-researchers-find-protein-that-marks-difference-between-cancer-and-non-cancer-cells/

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Researchers advance technique to detect ovarian cancer

, 26 August 2020/in E-News /by 3wmedia

Researchers at Rice University and the University of Texas MD Anderson Cancer Center have refined and, for the first time, run in vivo tests of a method that may allow nanotube-based probes to locate specific tumours in the body. Their ability to pinpoint tumours with sub-millimetre accuracy could eventually improve early detection and treatment of ovarian cancer.
The non-invasive technique relies on single-walled carbon nanotubes that can be optically triggered to emit shortwave infrared light.
For this study, the researchers used the technique to pinpoint small concentrations of nanotubes inside rodents. The lab of co-author Dr. Robert Bast Jr., an expert in ovarian cancer and vice president for translational research at MD Anderson, inserted gel-bound carbon nanotubes into the ovaries of rodents to mimic the accumulations that are expected for nanotubes linked to special antibodies that recognize tumour cells. The rodents were then scanned with the Rice lab’s custom-built optical device to detect the faint emission signatures of as little as 100 picograms of nanotubes.
The device irradiated the rodents with intense red light from an array of light-emitting diodes and read fluorescent signals with a specialized sensitive detector. Because different types of tissue absorb emissions from the nanotubes differently, the scanner took readings from many locations to triangulate the tumour’s exact location, as confirmed by later MRI scans.
Weisman said it should be possible to noninvasively find small ovarian tumours within rodents used for medical research by linking nanotubes to antibody biomarkers and administering the biomarkers intravenously. The biomarkers would accumulate at the tumour site. He said more refined versions of the optical scanner may then be able to locate a tumour within seconds, and further advances may extend the method’s application to human cancer detection. The new results suggested that antibody-nanotube probes could potentially detect tumours with as few as 100 ovarian cancer cells, which could make it a valuable tool for early detection.
Rice University
news.rice.edu/2017/11/30/researchers-advance-technique-to-detect-ovarian-cancer-2/

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Researchers take a step closer to developing a DNA test for liver cancer

, 26 August 2020/in E-News /by 3wmedia

A group of researchers from Mayo Clinic and Exact Sciences Corporation have completed a phase II study comparing a set of DNA markers to alpha fetoprotein as a method to test for liver cancer.
“We currently test for liver cancer using ultrasound and a blood protein marker called alpha fetoprotein,” says John Kisiel, M.D., a gastroenterologist at Mayo Clinic. “Unfortunately, these tests are not very sensitive for curable stage liver cancers, and most patients who need this testing do not have it easily available or [are] not able to receive it often enough to be effective.”
Dr. Kisiel and his colleagues developed a simple blood test using abnormal DNA markers that are known to exist in liver cancer tissues. They were able to confirm that the abnormal DNA markers were present in the overwhelming majority of blood samples that came from people with primary liver cancers. Simultaneously, these markers were absent in healthy individuals and individuals with cirrhosis of the liver but no evidence of tumours on their clinical follow-up.
“We were most excited that our DNA markers were able to detect more than 90 percent of patients with curable stage tumours,” says Dr. Kisiel. “This is the main reason why we think a DNA test will make difference, compared to currently available tests.” Dr. Kisiel says the next step will be to validate these markers in blood testing on much larger patient cohorts.

Mayo Clinic Cancer Center
newsnetwork.mayoclinic.org/discussion/mayo-clinic-researchers-take-a-step-closer-to-developing-a-dna-test-for-liver-cancer/

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Genetic variants linked to type 2 diabetes identified in Chinese populations

, 26 August 2020/in E-News /by 3wmedia

Researchers investigated genomes from diverse Chinese populations to identify new and known genetic variants that contribute to a person’s blood sugar level and risk of Type 2 diabetes. Karen Mohlke at the University of North Carolina at Chapel Hill, Wei Huang at the Chinese National Human Genome Center and Shanghai Industrial Technology Institute, and their colleagues report these findings.
Type 2 diabetes affects more than 422 million people worldwide and at least 30% of these cases occur in East Asian populations. A person’s risk of Type 2 diabetes, as well as the levels of blood sugar, insulin and HbA1c, which gives an average of recent blood sugar levels, are all inherited traits. The genetic variants that contribute to these traits can vary between populations, so researchers conducted genome-wide association analyses to identify these variants in up to 7,178 Chinese individuals from nine provinces who participated in the China Health and Nutrition Survey (CHNS). The study identified new variants and confirmed 32 previously described variants believed to contribute to Type 2 diabetes and blood sugar level, which vary in frequency across the population. The researchers also performed laboratory assays to show that one variant located in a gene regulatory element between the SIX2 and SIX3 genes reduces transcriptional activity and gene expression in pancreatic islets, leading to elevated blood sugar. "We compared variants linked to glucose level in East Asians with variants linked to islet gene expression levels in Europeans,"Dr. Mohlke explained. "This cross-ancestry comparison helped define a molecular mechanism that supports, in humans, a role for the SIX3 and/or SIX2 transcription factors affecting insulin secretion."
A next step in this work will be to investigate further the function of other genetic variants identified in the study to better understand how they contribute to blood sugar levels and risk of Type 2 diabetes. This work also highlights the usefulness of the diverse population within the CHNS for performing genetic studies. As researchers conduct more genome-wide meta-analyses across genetically diverse populations, they will likely identify additional genetic variants that will better explain the levels of heritability of complex traits like diabetes.
EurekAlertwww.eurekalert.org/pub_releases/2018-04/p-gvl032918.php

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