Epigenetics company Base Genomics has launched with a team of leading scientists and clinicians with the aim of setting a new gold standard in DNA methylation detection. The company has closed an oversubscribed seed funding round of US$11 million to accelerate development of its TAPS technology, initially focusing on developing a blood test for early-stage cancer and minimal residual disease. The funding round was led by Oxford Sciences Innovation.
DNA methylation is an epigenetic mechanism involved in gene regulation and has been shown to be one of the most promising biomarkers for detecting cancer through liquid biopsy. The existing industry standard for mapping DNA methylation degrades DNA and reduces sequence complexity, however, limiting scientific discovery and clinical sensitivity. Base Genomics’ new technology, TAPS, overcomes these issues and generates significantly more information from a given sample, creating new opportunities in research and clinical application.
Dr Anna Schuh, CMO, Base Genomics, commented: “In order to realize the potential of liquid biopsies for clinically meaningful diagnosis and monitoring, sensitive detection and precise quantification of circulating tumour DNA is paramount. Current approaches are not fit for purpose to achieve this, but Base Genomics has developed a game-changing technology which has the potential to make the sensitivity of liquid biopsies a problem of the past.”
First developed at Ludwig Institute for Cancer Research Branch at the University of Oxford, TAPS is a novel chemical reaction that converts methylated cytosine to thymine under mild conditions. Unlike the industry standard technology, bisulfite sequencing, TAPS does not degrade DNA, meaning that significantly more DNA is available for sequencing. TAPS also better retains sequence complexity, cutting sequencing costs in half and enabling simultaneous epigenetic and genetic analysis.
Dr Vincent Smith, CTO, Base Genomics said: “[TAPS] has the potential to have an impact on epigenetics similar to that which Illumina’s SBS chemistry had on Next Generation Sequencing.”
Base Genomics is led by a highly experienced team of scientists and clinicians, including Dr Smith, a world-leader in genomic product development and former Illumina VP; Dr Schuh, Head of Molecular Diagnostics at the University of Oxford and Principal Investigator on over 30 clinical trials; Drs Chunxiao Song and Yibin Liu, co-inventors of TAPS at the Ludwig Institute for Cancer Research, Oxford; and Oliver Waterhouse, previously an Entrepreneur in Residence at Oxford Sciences Innovation and founding team member at Zinc VC.
Waterhouse, founder and CEO, Base Genomics, said: “The ability to sequence a large amount of high-quality epigenetic information from a simple blood test could unlock a new era of preventative medicine. In the future, individuals will not just be sequenced once to determine their largely static genetic code, but will be sequenced repeatedly over time to track dynamic epigenetic changes caused by age, lifestyle, and disease.”
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OXGENE and The Native Antigen Company are collaborating to scale up production of SARS-CoV-2 reagents by combining OXGENE’s proprietary Adenoviral Protein Machine Technology with The Native Antigen Company’s antigen development expertise. Together, they aim to scale their antigen manufacturing capabilities to deliver high-purity, recombinant proteins for the development of diagnostics and vaccines.
Unlike the PCR tests that are currently being used, these diagnostics will be able to confirm past infections and determine levels of immunity to SARS-CoV-2. This could be invaluable for disease modelling and public health policy, as true transmission rates and case fatality rates can be determined. These tests could also be instrumental for the diagnosis of healthcare workers who have been exposed to the virus to ensure that they have developed natural immunity before returning to work, and to help measure patient immune responses for the rapid development of a SARS-CoV-2 vaccine.
The Native Antigen Company was one of the first recognised suppliers of SARS-CoV-2 antigens in February 2020, demonstrating their ability to rapidly support the diagnostic and vaccine industries with high-quality infectious disease reagents.
OXGENE’s Protein Machine Technology allows for the scalable production of viral proteins in mammalian cells using their proprietary adenoviral expression vector. Through genetic modification, the adenovirus is ‘tricked’ into making SARS-CoV-2 proteins rather than its own, thereby harnessing the innate power of highly scalable viral protein production.
Commenting on the collaboration, Dr Ryan Cawood, Chief Executive, OXGENE, said: “Our novel Protein Machine Technology represents a significant development in the rapid and scalable generation of high-quality viral proteins. We’re delighted that by collaborating with The Native Antigen Company, we can take advantage of our technology to support the needs of researchers racing to develop much-needed diagnostics and vaccines against COVID-19.”
The Native Antigen Company’s recombinant SARS-CoV-2 antigens are produced in mammalian cells to ensure full glycosylation and proper protein folding, both of which are essential for full biological and antigenic activity. The rapid scale up production of SARS-CoV-2 antigens is critical for the development of widely available diagnostic tests.
Dr Andy Lane, Commercial Director, The Native Antigen Company, said: “We are committed to developing the highest-quality reagents in rapid response to emerging epidemic diseases. Since the start of the crisis, the demand for our COVID-19 antigens has increased significantly, and by scaling up production of these vital reagents in collaboration with OXGENE, we hope to be able to support more researchers in their critical work developing diagnostics and vaccines.”
This collaboration builds on a long-standing collegiate relationship between the two Oxford-based businesses as they work towards developing more scalable technologies for the diagnosis of disease, and the cost-effective manufacture of high-quality diagnostics and vaccines.
OXGENE and The Native Antigen Company aim to complete the first validation of this new paradigm in protein expression by May 2020, which could have a demonstrable impact on the race to develop diagnostic kits and vaccines against this virus.
For further information about The Native Antigen Company’s Coronavirus Antigens, visit: https://thenativeantigencompany.com/coronavirus-dashboard/
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Modern science and data sharing converged to underpin a study led by the Translational Genomics Research Institute (TGen), an affiliate of City of Hope, that identified a gene associated with a rare condition that results in physical and intellectual disabilities of children.
The results suggest that rare variants in the gene DDX6 are associated with a significant disruption in the development of the central nervous system, governing such basic skills as the ability to walk and talk.
“One of the most powerful revelations of this study is the identification of pathogenic mutations in DDX6; a gene not previously linked to childhood disorders and one which appears to play a key role in early brain development,” said Chris Balak, a research associate in TGen’s Neurogenomics Division, and the study’s lead author.
Balak zeroed in on DDX6 by comparing the sequencing results from a 5-year-old Arizona girl who was seen at TGen’s Center for Rare Childhood Disorders (the Center) with those identified in large population databases and to the genomes of her parents, who are healthy. Following this revelation, and preliminary findings posted on a website shared by investigators worldwide, TGen identified four similar cases: two in the U.S., and one each in France and the Netherlands.
These children’s conditions were characterized by intellectual disability, developmental delay, speech and feeding difficulties, low muscle strength with difficulties walking, mild-to-moderate cardiac anomalies, and specific facial features.
“Something we are quite proud of with this work is our combined effort with other physi- cians and scientists in Europe to demonstrate that changes in this gene cause this rare syndrome in multiple patients,” said Dr. Matt Huentelman, TGen Professor of Neruogenomics, Scientific Director of the Center, and one of the study’s senior authors. “Collectively, our clinical and laboratory data describe a new brain development syndrome caused by genetic changes in DDX6.”
TGenwww.tgen.org/news/2019/august/15/tgen-identifies-ddx6-linked-to-disabilities/
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by Dr Huub H. van Rossum Recently, significant improvements have been made in understanding and applying moving average quality control (MA QC) that enable its practical implementation. These include the description of new and laboratory-specific MA QC optimization and validation methods, the online availability thereof, insights into operational requirements, and demonstration of practical implementation. Introduction Moving average quality control (MA QC) is the process of algorithmically averaging obtained test results and using that average for (analytical) quality control purposes. MA QC is generally referred to as patient-based real-time quality control (PBRTQC) because it is one of various methods (e.g. limit checks, delta checks, etc) that use patient results for (real-time) quality control. MA QC was first described over half a century ago as ‘average of normals’ [1]. Since then, it has evolved into a more general MA QC concept not necessarily based on using mean calculations of the obtained ‘normal’ test results [2]. Although MA QC has been available for a few decades, its adoption by laboratories has been limited due to the complexity of setting up the necessary procedures, operational challenges and a lack of evidence to justify its application and demonstrate its value. During the past 5|years, however, significant improvements have been made in the field of MA QC, and research studies have addressed all these issues. Consequently, true practical application of validated MA QC procedures to support analytical quality control in medical laboratories is now possible. Furthermore, the recent improvements may well change the way we perform daily analytical quality control in medical laboratories in the near future. MA QC optimization and validation The recent significant improvements in the field of MA QC include, first and foremost, the description of new methods to design and optimize laboratory-specific MA QC procedures and to enable validation of their actual error-detection performance [2–5]. These methods use realistic MA QC simulations based on laboratory-specific datasets and thus provide objective insights into MA QC error detection [2]. To enable practical implementation, the requirement that the number of MA QC alarms must be manageable is now acknowledged as essential and has been fulfilled when setting up MA QC [2, 6]. The newly developed methods use a novel metric to determine the error-detection performance: that is, the mean or median number of test results needed for error detection. One of the new methods presents these simulation results in bias-detection curves so that the optimal MA QC procedure can be selected, based on its overall error-detection performance [5]. An example of a bias-detection curve and its application is presented in Figure 1. After selecting the optimal MA QC settings, an MA validation chart can be used to obtain objective insights into the overall error-detection performance and the uncertainty thereof. Therefore, this chart can be seen as a validation of the MA QC procedure. An example of an MA validation chart is presented in Figure 2 and shows that the MA QC procedure will almost always (with 97.5% probability) detect a systematic error of −4% (or larger negative errors) within 20 test results.
Importantly, this method has become available to laboratories via the online MA Generator application, enabling them to design their own optimized and validated MA QC procedures [7]. Laboratories can now upload their own datasets of historical results, study potential MA QC settings using this simulation analysis and obtain their own laboratory-specific MA QC settings and MA validation charts. Several laboratories have demonstrated that this tool has enabled them to obtain relevant MA QC settings and thus implement MA QC [8, 9]. Integration of MA QC with internal QC Measurement of internal quality control (iQC) samples is still the cornerstone of analytical quality control as performed in medical laboratories. For many tests, iQC alone is sufficient to assure and control the quality of obtained test results. For some tests, however, iQC itself is insufficient. The reasons for this are related to certain fundamental characteristics of iQC that include: lack of available (stable) control materials, its scheduled character, the risk of using non-commutable control samples and tests with a sigma metric score of ≤4. For several reasons, PBRTQC or, more specifically, MA QC is a particularly valuable and powerful way to support quality assurance in such cases.
First, if no (stable) QC materials are available it is impossible, or it becomes complicated, to use iQC. This is, for example, relevant for the erythrocyte sedimentation rate, serum indices or hemocytometry tests including erythrocyte mean corpuscular volume in particular. MA QC is possible as long as patient results are available. Second, the scheduled character of iQC becomes a limitation and a risk when temporary assay failures or rapid onset of critical errors occur between scheduled iQC. Because a new MA QC value can be calculated for each newly obtained test result, MA QC can be designed as a continuous and real-time QC tool. In this context, detection of temporary assay failure by MA QC between scheduled iQC has been demonstrated for a sodium case [10], and several examples of MA QC detection of rapid onset of critical errors have been published for both chemistry and hematological tests [11]. Third, because PBRTQC methods such as MA QC use obtained patient results, by design there is no commutability issue. Fourth, and finally, for some tests iQC is intrinsically limited in its ability to detect relevant clinical errors, due to the low ratio of biological variations to analytical variations, as reflected in low sigma metric values. Such tests require frequent iQC analysis and application of stringent control rules. However, even with such an intensive and strict iQC set-up, the probability of detecting clinically relevant errors remains limited [12]. In contrast, MA QC has the best error-detection performance for tests with a low sigma value [13].
For all these reasons, MA QC is ideal for supplementing analytical quality control by iQC. Recently, an approach was presented that integrated MA QC into the QC plan when iQC was found to be insufficient [9]. This approach was based on first determining whether one of the abovementioned iQC limitations applied to a test. If so, then iQC alone was considered insufficient and MA QC was studied, using the online MA Generator tool (www.huvaros.com) to obtain optimal MA QC settings and MA QC procedures to support the analytical quality control [7, 9]. The MA QC error-detection performance was validated using MA validation charts. These latter insights into MA QC error detection also enabled iQC measurements to be reduced. The MA QC procedures alone provided significant error-detection performance, so running iQC measures multiple times a day would add only limited error-detection performance. Therefore, it was decided to run the iQC only once a day and add the obtained MA QC procedures to the QC plan.
Others have taken this a step further and studied MA QC not only for tests with limited iQC performance but also for a much larger test selection, in order to reduce the number of iQC measures and more efficiently schedule and apply iQC [4]. This approach has been shown to be successful for a large commercial laboratory with high production numbers. Since the MA QC error-detection performance improves with an increasing number of test results and benefits from a small number of pathological test results, this approach may be particularly valuable to the larger commercial laboratories. For such an approach, the key is objective insights into the error-detection performance of MA QC procedures such as obtained using MA validation charts. Implementation and application of MA QC for real-time QC in medical laboratories The final aspect in which there have been significant improvements in recent years relates to the practical application of MA QC in medical laboratories. Recently, an International Federation of Clinical Chemistry and Laboratory Medicine working group was founded that summarized medical laboratories’ experiences of practically applying MA QC and formulated several recommendations for both MA QC software suppliers and medical laboratories that are working on, or are interested in, implementation of MA QC [14, 15]. Also, a step-by-step roadmap has recently been published to enable MA QC implementation [9]. The first two steps of this roadmap – i.e. selection of tests and obtaining MA QC settings for them – were discussed in the previous two paragraphs.
The next step would be to set up and configure the software used to implement MA QC in medical laboratories. If you are interested in applying MA QC in your laboratory, it is important to review the available software (e.g. analyser, middleware, LIS, third party) and to decide which will be used to run and apply MA QC. Your decision depends not only on the availability of suitable software in or for the laboratory, but also on the actual MA QC functionality present in the software packages.
The minimum software features that are necessary to enable practical implementation have been formulated [2, 15]. In my view, key elements would be that the software supports: exclusion of specified samples (non-patient materials, QC results, extreme results, etc), calculation of relevant MA QC algorithms, applying SD-based as well as non-statistical control limits (plain lower and upper control limits), proper real-time alarming and – depending on the MA QC optimization method – presentation of MA QC in a Levey–Jennings or accuracy graph. Figure 3 presents an example of MA QC in an accuracy graph as operated for real-time QC in my laboratory. To enable effective implementation of MA QC, all of these software features should be configured.
The final implementation step I wish to address here is the design of laboratory protocols for working up MA QC alarms, which determines the extent to which an error detected by an MA QC alarm is acknowledged. An important requirement is that all MA QC alarms should be worked up by means of this protocol.
As previously indicated, because MA QC can generate many more QC results and alarms than iQC, a critical requirement of every MA QC procedure is a manageable number of alarms. As a result, when an MA QC alarm occurs there is a reasonable chance of detecting error.
A first common action as part of the MA QC alarm protocol would be to run iQC. This provides a quick insight into the size of the error and enables rapid confirmation of large errors. As a second step, re-running of recently analysed samples (in addition to running iQC) enables temporary assay failures to be detected and can confirm or exclude errors not necessarily detectable by iQC. Also, finally, a review of recently analysed test results to identify a pre-analytical cause or a single patient with extreme but valid test results is often very useful as part of the MA QC alarm protocol. All these aspects have recently been discussed in greater detail [10, 14]. Conclusions Altogether, the recent developments in the field of PBRTQC and, more specifically, MA QC now – finally – enable true practical implementation of MA QC in medical laboratories and allow more effective and efficient QC plans to be designed. The authors Huub H. van Rossum1,2 PhD 1 Department of Laboratory Medicine, The Netherlands Cancer Institute, Amsterdam, The Netherlands 2 Huvaros, Amsterdam, The Netherlands
E-mail: h.v.rossum@nki.nl
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Working with model mice, post-mortem human brains, and people with schizophrenia, researchers at the RIKEN Center for Brain Science in Japan have discovered that a subtype of schizophrenia is related to abnormally high levels hydrogen sulfide in the brain.
Experiments showed that this abnormality likely results from a DNA-modifying reaction during development that lasts throughout life. In addition to providing a new direction for research into drug therapies, higher than normal levels of the hydrogen sulfide-producing enzyme can act as biomarker for this type of schizophrenia.
Diagnosing disorders of thought is easier when a reliable and objective marker can be found. In the case of schizophrenia, we have known for more than 30 years that it is associated with an abnormal startle response. Normally, we are not startled as much by a burst of noise if a smaller burst – called a prepulse – comes a little bit earlier. This phenomenon is called prepulse inhibition (PPI) because the early pulse inhibits the startle response. In people with schizophrenia, PPI is lowed, meaning that their startle response is not dampened as much as it should be after the prepulse.
The PPI test is a good behavioural marker, and although it cannot directly help us understand the biology behind schizophrenia, it was the starting point that led to current discoveries.
The researchers at RIKEN CBS began first looked for differences in protein expression between strains of mice that exhibit extremely low or extremely high PPI. Ultimately, they found that the enzyme Mpst was expressed much more in the brains of the mouse strain with low PPI than in the strain with high PPI. Knowing that this enzyme helps produce hydrogen sulfide, the team then measured hydrogen sulfide levels and found that they were higher in the low-PPI mice.
"Nobody has ever thought about a causal link between hydrogen sulfide and schizophrenia," says team leader Takeo Toshikawa. "Once we discovered this, we had to figure out how it happens and if these findings in mice would hold true for people with schizophrenia."
First, to be sure that Mpst was the culprit, the researchers created an Mpst knockout version of the low-PPI mice and showed that their PPI was higher than that in regular low-PPI mice. Thus, reducing the amount of Mpst helped the mice become more normal. Next, they found that MPST gene expression was indeed higher in postmortem brains from people with schizophrenia than in those from unaffected people. MPST protein levels in these brains also correlated well with the severity of premortem symptoms.
Now the team had enough information to look at MPST expression as a biomarker for schizophrenia. They examined hair follicles from more than 150 people with schizophrenia and found that expression of MPST mRNA was much higher than people without schizophrenia. Even though the results were not perfect-indicating that sulfide stress does not account for all cases of schizophrenia-MPST levels in hair could be a good biomarker for schizophrenia before other symptoms appear.
Whether a person develops schizophrenia is related to both their genetics and the environment. Testing in mice and postmortem brains indicated that high MPST levels were associated with changes in DNA that lead to permanently altered gene expression. So, the next step was for the team to search for environmental factors that could result in permanently increased MPST production.
Because hydrogen sulfide can actually protect against inflammatory stress, the group hypothesized that inflammatory stress during early development might be the root cause. "We found that anti-oxidative markers – including the production of hydrogen sulfide – that compensate against oxidative stress and neuroinflammation during brain development were correlated with MPST levels in the brains of people with schizophrenia," says Yoshikawa.
He proposes that once excess hydrogen sulfide production is primed, it persists throughout life due to permanent epigenetic changes to DNA, leading to "sulfide stress" induced schizophrenia.
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Researchers have demonstrated that an optical technique known as Raman spectroscopy can be used to differentiate between benign and cancerous thyroid cells. The new study shows Raman spectroscopy’s potential as a tool to improve the diagnosis of thyroid cancer, which is the ninth most common cancer with more than 50,000 new cases diagnosed in the United States each year.
“Our encouraging results show that Raman spectroscopy could be developed into a new optical modality that can help avoid invasive procedures used to diagnose thyroid cancer by providing biochemical information that isn’t currently accessible,” said James W. Chan from the University of California, Davis, U.S.A. “This could have a major impact in the field of pathology and could lead to new ways to diagnose other diseases.”
A lump — or nodule — in the neck is a common symptom of thyroid cancer. However, most thyroid nodules aren’t cancerous. Ultrasound-guided fine needle aspiration biopsies are typically used to check for cancer by inserting a thin needle into the nodule to obtain cells that are prepared on a microscope slide, stained and analysed by a pathologist. For about 15 to 30 percent of cases, the pathologist cannot determine whether cells acquired from the biopsy are benign or malignant. For these cases, a surgical procedure known as a thyroidectomy is required to remove tissue, which provides more information for a more accurate diagnosis. The researchers turned to Raman spectroscopy as a possible solution because it is a non-invasive technique that requires no sample preparation or staining to determine subtle differences in the molecular composition of complex samples such as cells. “We would like to use Raman spectroscopy to improve the pathologist’s analysis of the cells obtained with fine needle aspiration to reduce the number of thyroidectomies necessary,” said Chan. “This would both minimize surgical complications and reduce healthcare costs.”
For the new study, the researchers used a line-scan Raman microscope that allowed them to rapidly acquire Raman signals from an entire cell volume. This allowed them to more accurately capture the chemical composition of entire cells compared to other approaches that acquire a Raman spectrum from only part of a cell’s volume. Multivariate statistical methods and classification methods were then used to analyse the Raman data and classify the cells in an objective, unbiased manner.
The researchers applied this Raman spectroscopy approach to individual cells isolated from 10 patient thyroid nodules diagnosed as benign or cancerous. The data analysis identified unique spectral differences that could distinguish cancerous cells from benign with 97 percent diagnostic accuracy. They also showed that other subtypes could be identified by their spectral differences.
“These preliminary results are exciting because they involve single cells from human clinical samples, but more work will need to be done to take this from a research project to final clinical use,” said Chan.
The Optical Society (OSA)
https://tinyurl.com/y6hw35z8
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LGC has acquired The Native Antigen Company (NAC), one of the world’s leading suppliers of high quality infectious disease antigens and antibodies.
NAC is a developer, manufacturer and supplier of critical reagents to the in vitro diagnostic (IVD), pharmaceutical and academic sectors. It offers a comprehensive portfolio of native and recombinant infectious disease antigens and related products including pathogen receptors, virus-like particles and antibodies for use in immunoassay applications, vaccine development and quality control solutions. NAC was one of the first companies globally to offer antigens for SARS-COV-2 and continues to play an important role in supporting the global response to the COVID-19 pandemic.
The acquisition strengthens LGC’s existing product offering to the IVD sector, which includes a range of quality assurance tools, immunoassay reagents and disease state plasma as well as probes and primers for molecular diagnostics.
“NAC is a natural fit with our clinical diagnostics business and will enable us to provide an expanded portfolio of critical reagents to our customers. NAC’s focus on infectious disease is highly complementary with our existing offer to this segment comprising controls, reference materials, MDx tools and other components,” said Michael Sweatt, Executive Vice President and General Manager, Clinical Diagnostics, LGC.
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Waltham, MA–Nova Biomedical to host “COVID-19 Bedside Glucose Management: Risk of Ascorbic Acid and Hematocrit Interference,” a webinar led by Charbel Abou-Diwan, PhD, Director of Medical and Scientific Affairs, to help inform and support healthcare workers treating COVID-19 patients.
Interest in the antioxidant properties of ascorbic acid use in critically ill patients is growing especially during the in the COVID-19 pandemic. As clinicians search for effective treatments for COVID-19, sepsis, and other critical illness, high dose ascorbic acid is widely considered. These patients are admitted to the ICU where routine POC glucose monitoring becomes part of their care path. Unfortunately, two widely used hospital glucose meters have a substantial interference from ascorbic acid that radically elevates glucose meter results, leading to potential adverse events. This webinar examines the risk of inaccurate glucose meter results due to ascorbic acid interference and how hospitals can protect their patients and protect themselves against this threat.
The webinar will be delivered on three dates: Thursday, April 30th at 2:00 PM EST, Thursday, May 28th at 1:00 PM EST, and Thursday, June 18th at 4:00 PM EST. Attendees can earn educational credits for attending and can register online at novabiomedical.com/poc/glu/covid
About Nova Biomedical
Incorporated in 1976 and based in Waltham, MA, Nova Biomedical is a world leader in the development and manufacturing of state-of-the-art, whole blood, point-of-care and critical care analyzers, as well as providing the biotechnology industry with the most advanced instruments for cell culture monitoring. Nova is one of the fastest growing in vitro diagnostic companies in the world. Nova’s biosensor technology is incorporated in products ranging from handheld meters for glucose self- and point-of-care testing to critical care whole blood analyzers designed for rapid measurement of over 20 analytes. Nova’s biotechnology-specific BioProfile line has pioneered comprehensive cell culture testing, providing over 20 critical cell culture tests with over 12 unique instrument offerings for broad range of cell culture applications. Nova employs over 1,300 people worldwide and has wholly owned subsidiaries located in Brazil, Canada, Great Britain, France, Spain, Italy, Germany, Switzerland, and Japan.
www.novabiomedical.com
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In healthy individuals, the Zika virus causes flu-like symptoms. If a pregnant woman becomes infected, the unborn child can suffer from severe brain abnormalities as a result of mechanisms that have not yet been explained. A study by the Technical University of Munich (TUM) and the Max Planck Institute of Biochemistry (MPI-B) shows that Zika virus proteins bind to cellular proteins that are required for neural development.
A few years ago, Zika virus spread across South America, posing a health issue with global impact. A significant number of South American women who came into contact with the virus for the first time at the start of their pregnancy by a mosquito bite subsequently gave birth to children with severe disabilities. The babies suffered from a condition known as microcephaly; they were born with a brain that was too small. This can lead to intellectual disabilities and other serious neurological disorders.
Scientists succeeded in proving that these deformities are caused by Zika virus infections, but so far they have been unable to explain why. Andreas Pichlmair, Chair for Viral Immunopathology at TUM and his team from the TUM Institute of Virology and MPI-B have examined how Zika virus influences human brain cells. They identified the virus proteins with the potential to affect neuronal development in the developing brain.
“Zika virus is closely related to the Hepatitis C virus and certain tropical diseases such as Dengue and West Nile virus. It is, however, the only virus that causes brain damage in newborns,” explains Pichlmair, who headed the recent study.
The researchers discovered that the virus uses certain cellular proteins to replicate its own genome. These molecules are also important neurological factors in the process of a stem cell developing into a nerve cell. “Our findings suggest that the virus takes these factors away from brain development and uses them to replicate its genome, which prevents the brain from developing properly,” explains the virologist.
When the team headed by Pichlmair removed the factors in the cells, the virus found it much harder to replicate. The researchers were able to demonstrate which virus proteins come in contact with these development factors and cause the brain defects. “Previous studies revealed the virus proteins necessary for the packaging or replication of the viral genome but it was enigmatic to understand how these proteins influence neuronal development. It appears that viral proteins are responsible for causing the serious defects in the unborn – unintentionally we presume,” says Pichlmair.
In their comprehensive proteomics survey, the research team identified cellular proteins that were altered chemically or numerically by the virus or which bound to virus proteins. In this way, they were not only able to illustrate possible reasons for the caused deformities, but also obtained a very clear picture of how the virus reprograms the cell to use it for its own replication.
www.tum.de/nc/en/about-tum/news/press-releases/details/34920/
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Abingdon Health will expand its York headquarters in the UK, following further investment in state-of-the-art lateral flow automation. This will substantially increase in its manufacturing footprint, resulting in Europe’s largest capacity for rapid test manufacturing, according to the company.
Abingdon Health is a technology-enabled lateral flow diagnostics company providing innovative rapid testing solutions to a multi-industry, global client base. The company provides specialist assay development and smartphone reader solutions alongside its lateral flow test manufacturing capacity.
The announcement of the expansion comes weeks after the UK Government announced Abingdon Health as one of the leading members of the UK Rapid Test Consortium.
Michael Hunter, Operations Director of Abingdon Health, commented: “The additional footprint and automation come at a timely moment as demand for rapid tests is growing rapidly, with the market likely to exceed US$10bn globally. Our precision automation and multi-site approach means we can adapt to meet the varying manufacturing needs of our growing global client base.”
Earlier this year, Abingdon Health announced a preliminary round of expansion in York after 90% revenue growth in 2019, thanks to new assay developments and assay manufacturing contract wins, and the introduction of its AppDx Smartphone reader software. In April 2020, growth continued with the acquisition of a new lateral flow manufacturing facility in Doncaster, UK. This latest expansion and investment in equipment comes as 2020 sees continuing high demand for Abingdon Health’s services.
Abingdon Health’s two manufacturing sites in York and Doncaster have the capacity to produce millions of rapid tests per month. This adaptable, dual-site approach provides a peace-of-mind solution that assures customers receive product consistency and a security of supply during routine scheduling and spikes in demand.
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