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Archive for category: E-News

E-News

Mutation in gene IDH a possible target for AML treatment

, 26 August 2020/in E-News /by 3wmedia

Many patients with acute myeloid leukemia (AML) share a mutation in a gene called IDH. A University of Colorado Cancer Center study shows that this IDH mutation may be the first domino in a chain that leads to a more aggressive form of the disease.
‘In fact, it’s not IDH itself that causes the problem,’ says Dan Pollyea, MD, MS, investigator at the CU Cancer Center and assistant professor of haematologic oncology at the University of Colorado School of Medicine. Rather, the mutation in IDH leads to exponentially higher blood levels of a protein called 2-hydroxyglutarate. This protein ‘mucks up,’ as Pollyea says, other genes that in turn promote cancer or fail to inhibit its growth.
The recent study shows that AML patients in remission who retain high levels of 2-hydroxyglutarate – due universally to IDH mutation – are much more likely to relapse than patients without similarly elevated levels.
The chain of causation includes another couple links.
‘2-hydroxyglutarate reduces genes’ ability to regulate themselves,’ says Pollyea. Over time genes accumulate gunk in the form of methylation – these methyl groups attach to silence parts of gene promoters, helping to decide which genes are and are not turned into proteins. Too much methylation is associated with many cancers, including AML. And 2-hydroxyglutarate turns off one of the body’s methylation-regulating genes.
So an IDH mutation leads to high 2-hydroxyglutarate, leads to bad gene regulation, leads to hypermethylation, leads to AML.
Pollyea hopes to stop the first domino from falling by targeting IDH mutations. ‘Imagine screening for patients prospectively and then if they have the mutation, we could use something like an IDH inhibitor,’ Pollyea says. Turn off this mutation and doctors may be able to turn of the disease, or at least its most aggressive characteristics.
But the genetic testing for IDH mutation is currently costly and time consuming. And so Pollyea hopes to identify patients with the IDH mutation by looking downstream – tests for blood-levels of 2-hydroxyglutarate being developed at the CU Cancer Center could determine the patients most likely to benefit from an IDH inhibitor.
Finally, Pollyea and colleagues including molecular biologist James DeGregori, PhD, are exploring novel ways to target the IDH mutation. ‘I think that even beyond the very real promise of IDH inhibitor drugs, this is a potential weak spot for AML that can be targeted in a number of ways,’ Pollyea says. University of Colorado Cancer Center

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Tongue analysis software developed at MU uses ancient Chinese medicine to warn of disease

, 26 August 2020/in E-News /by 3wmedia

For 5,000 years, the Chinese have used a system of medicine based on the flow and balance of positive and negative energies in the body. In this system, the appearance of the tongue is one of the measures used to classify the overall physical status of the body, or zheng. Now, University of Missouri researchers have developed computer software that combines the ancient practices and modern medicine by providing an automated system for analysing images of the tongue.
‘Knowing your zheng classification can serve as a pre-screening tool and help with preventive medicine,’ said Dong Xu, chair of MU’s computer science department in the College of Engineering and study co-author. ‘Our software helps bridge Eastern and Western medicine, since an imbalance in zheng could serve as a warning to go see a doctor. Within a year, our ultimate goal is to create an application for smartphones that will allow anyone to take a photo of their tongue and learn the status of their zheng.’
The software analyses images based on the tongue’s colour and coating to distinguish between tongues showing signs of ‘hot’ or ‘cold’ zheng. Shades of red and yellow are associated with hot zheng, whereas a white coating on the tongue is a sign of cold zheng.
‘Hot and cold zheng doesn’t refer directly to body temperature,’ said Xu, who is also on the faculty of the Bond Life Sciences Center. ‘Rather, it refers to a suite of symptoms associated with the state of the body as a whole.’
For example, a person with cold zheng may feel chills and coolness in the limbs and show a pale flushing of face. Their voice may have a high pitch. Other symptoms of cold sheng are clear urine and loose stool. They also may prefer hot foods and drinks and desire warm environments.
In Chinese traditional medicine both hot and cold zheng can be symptoms of gastritis, an inflammation of the stomach lining frequently caused by bacterial infection.
For the study, 263 gastritis patients and 48 healthy volunteers had their tongues analysed. The gastritis patients were classified by whether they showed infection by a certain bacteria, known as Helicobacter pylori, as well as the intensity of their gastritis symptoms. In addition, most of the gastritis patients had been previously classified with either hot or cold zheng. This allowed the researchers to verify the accuracy of the software’s analysis.
‘Our software was able to classify people based on their zheng status,’ said study co-author Ye Duan, associate professor of computer science at MU.
‘As we continue to work on the software we hope to improve its ability,’ Duan said. ‘Eventually everyone will be able to use this tool at home using webcams or smartphone applications. That will allow them to monitor their zheng and get an early warning about possible ailments.’ University of Missouri

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Fat outside of arteries may influence onset of coronary artery disease

, 26 August 2020/in E-News /by 3wmedia

Researchers at UC have confirmed that fat surrounding the outside of arteries in humans—particularly the left coronary artery—may influence the onset of coronary artery disease, or atherosclerosis, which is the leading cause of death in the U.S.
These findings may help in identifying the molecular culprit, with the goal of creating targeted therapies for atherosclerosis before the disease forms.
Coronary artery disease is a narrowing of the small blood vessels that supply blood and oxygen to the heart.
Tapan Chatterjee, PhD, and researchers in the division of cardiovascular diseases at UC found through global gene expression analysis (measurement of the activity of thousands of genes at once) that this outer fat tissue—known as perivascular fat tissue—is different from subcutaneous (beneath the skin) fat tissues in other parts of the body.
Research has previously shown that perivascular fat tissue in humans with coronary artery diseases is highly inflamed, leading to the belief that dysfunctional perivascular fat is the real culprit in the formation of coronary artery diseases.
Chatterjee’s team was able to replicate this inflammation in animal models.
‘The proximity of the perivascular fat to the artery easily influences the function of the coronary blood vessel wall,’ Chatterjee says. ‘The perivascular fat is very sensitive to high-fat diet induced inflammatory changes in mice. We found that by transplanting perivascular fat from high-fat diet fed obese mice to the carotid artery of lean mice, the tissue was detrimental to the blood vessel wall and promptly caused disease to form there.
‘Our next steps will be to identify various secreted factors, or signals, from perivascular fat tissue of obese mice that could negatively influence the functions of the blood vessel wall,’ he continues. ‘We believe this cross-talk between perivascular fat and the coronary artery is very important in triggering coronary artery diseases. We hope this knowledge helps in targeting the molecules before the onset of coronary artery diseases and treating patients before they ever experience the disease.’ University of Cincinnati Academic Health Center

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Abnormal gene product associated with prostate cancer generated by unusual mechanism

, 26 August 2020/in E-News /by 3wmedia

Researchers have identified a potential new pathway in prostate cancer cells by which cancer-driving gene products can be generated, according to a study.
‘Our work shows that cancers have many more tricks than we thought to generate potential cancer-driving genes or gene products,’ said Hui Li, Ph.D., assistant professor of pathology at the University of Virginia in Charlottesville, and a recipient of an Innovative Research Grant from Stand Up To Cancer (SU2C). The AACR is the scientific partner of SU2C.
Gene fusion is a common characteristic of human cancers. In many cases, the protein products of these gene fusions, which are generated via an RNA intermediate, have a key role in the genesis of the cancer. A well-characterised example of this is the protein that drives chronic myeloid leukaemia, BCR-ABL, which is generated via RNA intermediates from a fusion gene formed by chromosomal translocation — an event involving exchange of genomic DNA between two distinct chromosomes.
‘For many years, chromosomal translocation was considered the sole way in which single RNAs consisting of copies of parts of two genes, so-called fusion RNAs, could be generated,’ said Li. ‘We have shown that fusion RNAs can be generated without changes to DNA by a new mechanism that we are calling cis-SAGe [cis-splicing of adjacent genes].’ Recently, a fusion RNA formed from parts of the SLC45A3 and ELK4 genes was identified in prostate cancer cells in the absence of any DNA alterations. Li and his colleagues confirmed in two prostate cancer cells lines that the SLC45A3-ELK4 fusion RNA could be detected even though there was no evidence of genomic DNA rearrangement.
Detailed molecular analysis of the prostate cancer cell lines indicated that the SLC45A3-ELK4 fusion RNA was generated by cis-SAGe. SLC45A3 and ELK4 are neighbouring genes, and cis-SAGe occurred when an RNA that crossed the boundary between the two genes was formed.
The protein CCCTC-binding factor normally acts to insulate SLC45A3 and ELK4 from each other. Li and his colleagues found that levels of this protein at the gene boundary inversely correlated with the amount of SLC45A3-ELK4 fusion RNA generated, providing molecular insight into how the quantity of this fusion RNA could be regulated.
A functional role for the SLC45A3-ELK4 fusion RNA in prostate cancer was suggested by two observations. First, it promoted the growth of the two prostate cancer cell lines in culture. Second, its levels in human prostate samples correlated with prostate cancer disease progression — normal prostate tissue expressed the lowest levels and prostate cancer specimens from men with metastatic disease expressed the highest levels.
‘These data are not sufficient to say that the SLC45A3-ELK4 fusion RNA has a causal role in prostate cancer,’ said Li. ‘But they are highly suggestive, and I am very excited that this high-risk project, which I would not have been able to pursue without the grant from Stand Up To Cancer, has uncovered what seems to be a new way in which cancer can be driven.’ EurekAlert

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Mild traumatic brain injury may alter the brain’s neuronal circuit excitability and contribute to brain network dysfunction

, 26 August 2020/in E-News /by 3wmedia

Even mild head injuries can cause significant abnormalities in brain function that last for several days, which may explain the neurological symptoms experienced by some individuals who have experienced a head injury associated with sports, accidents or combat, according to a study by Virginia Commonwealth University School of Medicine researchers.
These findings advance research in the field of traumatic brain injury (TBI), enabling researchers to better understand what brain structural or functional changes underlie posttraumatic disorders – a question that until now has remained unclear.
Previous research has shown that even a mild case of TBI can result in long-lasting neurological issues that include slowing of cognitive processes, confusion, chronic headache, posttraumatic stress disorder and depression.
The VCU team, led by Kimberle M. Jacobs, Ph.D., associate professor in the Department of Anatomy and Neurobiology, demonstrated for the first time, using sophisticated bioimaging and electrophysiological approaches, that mild injury can cause structural disruption of axons in the brain while also changing the way the neurons fire in areas where they have not been structurally altered. Axons are nerve fibers in the brain responsible for conducting electrical impulses. The team used models of mild traumatic brain injury and followed morphologically identified neurons in live cortical slices.
‘These findings should help move the field forward by providing a unique bioimaging and electrophysiological approach to assess the evolving changes evoked by mild TBI and their potential therapeutic modulation,’ said co-investigator, John T. Povlishock, Ph.D., professor and chair of the VCU School of Medicine’s Department of Anatomy and Neurobiology and director of the Commonwealth Center for the Study of Brain Injury.
According to Povlishock, additional benefit may also derive from the use of this model system with repetitive injuries to determine if repeated insults exacerbate the observed abnormalities. Virginia Commonwealth University

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Study identifies genes linked to post-traumatic stress disorder

, 26 August 2020/in E-News /by 3wmedia

Why do some people experience post-traumatic stress disorder (PTSD) while others who suffered the same ordeal do not? A new UCLA study may shed light on the answer.

UCLA scientists have linked two genes involved in serotonin production to a higher risk of developing PTSD. The findings suggest that susceptibility to PTSD is inherited, pointing to new ways of screening for and treating the disorder.

‘People can develop post-traumatic stress disorder after surviving a life-threatening ordeal like war, rape or a natural disaster,’ said lead author Dr. Armen Goenjian, a research professor of psychiatry at the Semel Institute for Neuroscience and Human Behavior at UCLA. ‘If confirmed, our findings could eventually lead to new ways to screen people at risk for PTSD and target specific medicines for preventing and treating the disorder.’

PTSD can arise following child abuse, terrorist attacks, sexual or physical assault, major accidents, natural disasters or exposure to war or combat. Symptoms include flashbacks, feeling emotionally numb or hyper-alert to danger, and avoiding situations that remind one of the original trauma.

Goenjian and his colleagues extracted the DNA of 200 adults from several generations of 12 extended families who suffered PTSD symptoms after surviving the devastating 1988 earthquake in Armenia.

In studying the families’ genes, the researchers found that persons who possessed specific variants of two genes were more likely to develop PTSD symptoms. Called TPH1 and TPH2, these genes control the production of serotonin, a brain chemical that regulates mood, sleep and alertness — all of which are disrupted in PTSD.

‘We suspect that the gene variants produce less serotonin, predisposing these family members to PTSD after exposure to violence or disaster,’ Goenjian said. ‘Our next step will be to try and replicate the findings in a larger, more heterogeneous population.’

PTSD affects about 7 percent of Americans and has become a pressing health issue for a large percentage of war veterans returning from Iraq and Afghanistan. The UCLA team’s discovery could be used to help screen people who may be at risk for developing PTSD.

‘A diagnostic tool based upon TPH1 and TPH2 could enable military leaders to identify soldiers who are at higher risk of developing PTSD and reassign their combat duties accordingly,’ Goenjian said. ‘Our findings may also help scientists uncover alternative treatments for the disorder, such as gene therapy or new drugs that regulate the chemicals responsible for PTSD symptoms.’

According to Goenjian, pinpointing genes connected with PTSD symptoms will help neuroscientists classify the disorder based on brain biology instead of clinical observation. Psychiatrists currently rely on a trial-and-error approach to identify the best medication for controlling an individual patient’s symptoms. UCLA

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IL’s leadership in haemostasis market enables transition to direct business model

, 26 August 2020/in E-News /by 3wmedia

Instrumentation Laboratory (IL) recently announced that their Strategic Alliance Cross-Distribution agreement with Beckman Coulter (BCI) will terminate on June 22, 2012, after more than twenty successful years. From June 23, 2012, IL will initiate direct sales, service, support and marketing to end-user customers in the US and Canada, for their own haemostasis product line, including the HemosIL line of reagents, ACL TOP family of haemostasis testing systems, ACL ELITE/ELITE PRO analysers and other ACL systems.

The transition will allow IL to apply the same direct business model employed in their critical care business, for over fifty years, to their haemostasis product line. Closer proximity to the customer means IL can quickly respond to changing needs, continuously improve the quality of products and services, expedite innovation to haemostasis labs, and reduce complexity of operations. R&D and manufacturing for all of IL’s haemostasis analysers and reagents, along with the company’s world-class haemostasis expertise, reside at their headquarters in Massachusetts and New York, USA.

IL will honour all customer contracts, including end-user and group purchasing organisation agreements. All current pricing, terms and conditions will remain in effect through the term of any existing agreement.

Instrumentation Laboratory
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Noninvasive stool test for colorectal cancer unaffected by variables

, 26 August 2020/in E-News /by 3wmedia

Research on an investigational DNA methylation test for colorectal cancer demonstrated that the only clinical variable that influenced test results was age, according to findings presented by researchers from the Mayo Clinic in Rochester, USA, at the AACR Annual Meeting 2012, held from March 31 – April 4. The group at the Mayo Clinic, in collaboration with Exact Sciences, developed the multimarker molecular stool test, which is highly sensitive to the critical cancer screening targets of early-stage cancers and precancerous adenomas. The researchers examined common patient variables, including age, gender, race, alcohol consumption, tobacco use, body mass and medication use in 500 patients undergoing screening colonoscopy or polyp follow-up. Patients had a normal colonoscopy in the last three years.With the exception of age, none of the variables influenced test results, nor did family history of colorectal cancer or polyps or personal history of polyps. Researchers have now selected the two markers least affected by age for further test development and validation based on these study results to try and minimise false positives and avoid unnecessary colonoscopies.

http://tinyurl.com/cfa2vum
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Blood vessel disease of retina may be marker of cognitive decline

, 26 August 2020/in E-News /by 3wmedia

Women 65 or older who have even mild retinopathy, a disease of blood vessels in the retina, are more likely to have cognitive decline and related vascular changes in the brain, according to a multi-institutional study led by scientists at the University of California, San Francisco (UCSF).
The findings suggest that a relatively simple eye screening could serve as a marker for cognitive changes related to vascular disease, allowing for early diagnosis and treatment, potentially reducing the progression of cognitive impairment to dementia.
As retinopathy usually is caused by Type II diabetes or hypertension, a diagnosis could indicate early stages of these diseases, before they are clinically detectable. Early diagnosis could allow for lifestyle or drug interventions when they might be most effective.
‘Lots of people who are pre-diabetic or pre-hypertensive develop retinopathy,’ said the lead author of the study, Mary Haan, DrPH, MPH, UCSF professor of epidemiology and biostatistics. ‘Early intervention might reduce the progression to full onset diabetes or hypertension.’
The results were based on data from the Women’s Health Initiative Memory Study and the Site Examination study, two ancillary studies of the Women’s Health Initiative Clinical Trial of Hormone Therapy.
In the study, the team followed 511 women with an average starting age of 69, for 10 years. Each year, the women took a cognition test focused on short-term memory and thinking processes. In the fourth year, they received an exam to assess eye health. In the eighth year, they received a brain scan.
Of the full group of women, 39 women, or 7.6 percent, were diagnosed with retinopathy. On average, these women scored worse on the cognition test than the other women. They had more difficulty, for instance, recalling a list of several words five minutes after hearing them.
The women with retinopathy also had more damage to the blood vessels of the brain. They had 47 percent more ischemic lesions, or holes, in the vasculature overall and 68 percent more lesions in the parietal lobe. The lesions, associated with vascular disease and sometimes stroke, are believed to be caused by high blood pressure. They also had more thickening of the white matter tracks that transmit signals in the brain, which also appear to be caused by high blood pressure.
Notably, the women did not have more brain atrophy, which is associated with Alzheimer’s disease. This result indicates that retinopathy is a marker of neurovascular disease rather than Alzheimer’s disease, according to Haan. University of California, San Francisco,

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Researchers isolate gene mutations in patients with inherited amyotrophic lateral sclerosis

, 26 August 2020/in E-News /by 3wmedia

A new genetic mutation that causes familial amyotrophic lateral sclerosis (ALS), a fatal neurological disorder also known as Lou Gehrig’s Disease, has been identified by a team of scientists led by researchers at the University of Massachusetts Medical School (UMMS). Mutations to the profilin (PFN1) gene, which is essential to the growth and development of nerve cell axons, is estimated to account for one to two percent of inherited ALS cases. The finding points to defects in a neuron’s cytoskeleton structure as a potential common feature among diverse ALS genes.
‘This discovery identifies what may possibly be a common biological mechanism involved across familial ALS cases regardless of genetics,’ said John Landers, PhD, associate professor of neurology and senior author of the study. ‘We know of at least three other ALS genes, in addition to PFN1, that adversely impact axon growth. If indeed, this is part of the disease’s mechanism, then it might also be a potential target for therapeutics.’
Robert Brown, MD, DPhil, a co-author on the study and chair of neurology at UMass Medical School, said ‘Dr. Landers has done great work in defining this new pathway for motor neuron death. We are delighted to have identified the defects in families from the U.S., Israel and France that we have been investigating for several years. Our finding is particularly exciting because it may provide new insights into ALS treatment targets.’
ALS is a progressive, neurodegenerative disorder affecting the motor neurons in the central nervous system. As motor neurons die, the brain’s ability to send signals to the body’s muscles is compromised. This leads to loss of voluntary muscle movement, paralysis and eventually respiratory failure. The cause of most cases of ALS is not known. Approximately 10 percent of cases are inherited. Though investigators at UMass Medical School and elsewhere have identified several genes shown to cause inherited or familial ALS, almost 50 percent of these cases have an unknown genetic cause.
The current study details the discovery of the PFN1 gene mutation among two large ALS families. Both families were negative for known ALS-causing mutations and displayed familial relationships that suggested a dominant inheritance mode for the disease. For each family, two affected members with maximum genetic distance were selected for deep DNA sequencing. To identify an ALS-causing mutation, genetic variations between the family members were identified and screened against known databases of human genetic variation, such as the 1000 Genomes Project. This narrowed down the resulting number of candidate, ALS-causing mutations to two within the first family and three within the second. Interestingly, both families contained different mutations within the same gene – PFN1, the likely causative mutation. With additional screening, the team documented that in a total of 274 families sequenced, seven contained a mutation to the PFN1 gene, establishing it as a likely cause for ALS.
While it is not certain how the PFN1 mutation causes ALS, the cellular functions it controls within the motor neurons are responsible for regulation of a number of activities, including the growth and development of the axon, the slender projection through which neurons transmit electrical impulses to neighboring cells, such as muscle. When introduced into motor neuron cells, normal PFN1 protein was found diffused throughout the cytoplasm. Conversely, the mutant PFN1 observed in ALS patients was found to collect in dense aggregates, keeping it from functioning properly. Motor neurons producing mutated PFN1 showed markedly shorter axon outgrowth.
‘The discovery that mutant PFN1 interferes with axon outgrowth was very exciting to us,’ said Claudia Fallini, PhD, a postdoctoral researcher at Emory University School of Medicine who collaborated with the UMass Medical School authors to investigate PFN1’s functions in cultured motor neurons. ‘It suggests that alterations in actin dynamics may be an important mechanism at the basis of motor neuron degeneration.’
‘In healthy neurons, PFN1 acts almost like a railroad tie for fibrous filaments called actin, which make up the axon’ said Landers. ‘PFN1 helps bind these filaments to each other, promoting outgrowth of the axon. Without properly functioning PFN1 these filaments can’t come together. Here we show that mutant PFN1 may contribute to ALS pathogeneses by accumulating in these aggregates and altering the actin dynamics in a way that inhibits axon outgrowth.’ EurekAlert

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