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Archive for category: Featured Articles

Featured Articles

Drivers of clinical lab technologies

, 26 August 2020/in Featured Articles /by 3wmedia

As with much else in healthcare, change is the driver of clinical lab technologies today. Rapid advances in genetics, especially the game-changing promise of biomarkers and personalized medicine, have dramatically extended the traditional spectrum of clinical lab technologies. A snapshot of the specialties within a modern clinical lab and the key drivers of change within each is provided below.

Blood banking: Over the past decade, automation has halved serological testing times. Nevertheless, enduring safety concerns have led to new technologies such as CAT (Column Agglutination), along with remote, real-time and secure monitoring of equipment by technical service providers.

Clinical chemistry and microbiology: The choice and sequencing of chromatography, mass spectrometry, electrophoresis, thermocycling or radioisotopes have become quicker and more reliable due to the widespread use of testing protocols. New tools for microbiologists include phosphoimaging and fluorescence activated cell sorters. One of the most promising fields at present consist of new DNA-based techniques.

Cytotechnology: Still focused largely on cancers, cytotechnology has expanded its scope from diagnosis to prognosis. The key drivers here are molecular diagnostics and FISH (fluorescence in situ hybridization), with data warehousing support for tissue correlation. FISH is used to track specific DNA sequences on chromosomes, by using probes which bind only with specific fragments of the chromosome; these are then identified by fluorescence microscopes. FISH has proved to be indispensable in diagnosing rare diseases such as Cri-du-chat, certain kinds of childhood leukemias, as well as syndromes like Prader-Willi and Angelman.

Histotechnology: Traditionally associated with cutting and staining tissue specimens for the study of diseases at a microscopic level, histotechnicians are now branching out into one of the fastest growing areas of clinical lab technology, namely immunohistochemistry. This is the localization of antigens via the use of labelled antibodies, with antigen-antibody interactions subsequently visualized by markers. The 1950s era technology of using fluorescent dye was followed by enzyme labelling in the 1960s and 1970s (respectively peroxidase and phosphatase). Colloidal gold permitted electron microscopes to be deployed for multi-level staining, since gold particles can be manufactured in a vast range of sizes. Other techniques include autoradiography, using radioactive elements as labels for visualizing  immunoreactions.

Immunology: Rather than the painstaking, bottom-up process of examining individual cells under a microscope, immunology is now becoming top-down. Fuelled by the Human Genome Project, studies of tissues and organs and the molecular pathways of the immune system have led to a host of new waypoints in mapping the progress of a disease (e.g signal transduction mechanisms), along with innovative tools such as custom-built peptide probes, supermagnetic nanobeads, hybridomas, epitopes and tetramer assays, in brief – the new science of proteomics.

Molecular biology: Automated cell counting equipment and ultra-sophisticated electron microscopes have buttressed the arsenal of tools to conduct protein and nucleic acid tests, above all the identification of anomalies and abnormalities. Precision remains a key driver in a field where a margin of 1/1,000 can be a serious error, and destroy the integrity of a unique sample. Another enduring concern is sterility, especially RNAse contamination.

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, 26 August 2020/in Featured Articles /by 3wmedia
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The fight against blood doping in sport

, 26 August 2020/in Featured Articles /by 3wmedia

Blood doping benefits endurance athletes (notoriously, but not only, cyclists) by raising the red blood cell (rbc) count or haematocrit, and so increasing the oxygen supply to the muscles. It is one of the most difficult types of drug abuse to detect. Awareness of blood doping was raised in the popular press recently when comments were made about the impressive nature of China’s Ye Shiwen’s Olympic gold medal wins and with Lance Armstrong’s (cycling’s famous winner of seven Tours de France after surviving advanced testicular cancer) sudden decision to drop his fight against the US Anti-Doping Agency’s drug charges. Hematocrit levels can be raised by a variety of methods ranging from legal altitude training, to the banned use of autologous blood transfusions and erythropoietin (EPO) injections.
Detection of these banned methods is extremely difficult and the fight against them is being waged in a number of ways. The UCI’s (cycling’s governing body) lines of defence include simply demonstrating possession of banned substances and monitoring hematocrit levels, with a limit set at 50% (normal being 41–50% for men).
Some early success was had with testing urine to distinguish pharmaceutical EPO from the nearly identical natural hormone by isolectric focusing, though its accuracy has been questioned with claims that it is not possible to distinguish pharmaceutical EPO from other unrelated proteins that are present in urine after strenuous exercise or as the result of sample degradation and bacterial contamination.
At present, tests that provide indirect evidence of autologous blood transfusion (where the athlete withdraws and then re-injects his own blood) are under development and involve looking at the ratio of immature to mature red blood cells and might also include the measurement of 2,3-bisphophoglycerate (2,3-BPG). As 2,3-BPG degrades over time, stored blood used for autologous transfusions would have less than fresh blood and so levels of 2,3-BPG lower than normal may then indicate blood doping by this method. The presence of plasticizers in the blood (from the IV bags in which blood is stored) has also been used as evidence of blood doping.
While these advances in the detection of blood doping are being made it is tempting to think that we have got there, that the cheats will be caught. However, in the high-stakes world of elite athletes this would be a naive hope: the possibility of athletes subjecting themselves to EPO gene therapy – so called gene doping – has been suggested and methods for the detection of transgenic DNA following in vivo gene transfer are already being developed.

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Malaria: a global threat

, 26 August 2020/in Featured Articles /by 3wmedia

Malaria threatens the existence of large numbers of children in tropical and subtropical areas of the world. Increasing malaria parasite drug-unresponsiveness and insecticides-unresponsive mosquitoes lead to emergence of new malaria foci. Insecticide-impregnated bed nets and case detection/prompt treatment with artesunate-based drug combinations offer the most effective control measures. Counterfeit antimalarial drugs pose a serious threat to malaria control. No effective vaccine has been introduced into clinical practice to date.

by Prof. E.A.G Khalil and Dr M.E.E. Elfaki

Malaria is a febrile parasitic disease that is transmitted by female mosquitoes with no known intermediate host except in the case of Plasmodium knowlesi. Malaria is prevalent over most areas of Asia, Africa, eastern Europe, south America and South Pacific. Hot climate and low socio economic conditions make malaria prevalent in these areas. Malaria affects 300 to 700 million people annually with 1-2 million deaths, mostly of children [1]. The malaria parasite can infect all age groups, but children and pregnant women are at an increased risk for developing the severe form of the disease. The red blood cells are the principal cells affected, the parasite usually affects red blood cells of all ages. There are five species of malaria parasite that cause human disease: Plasmodium falciparum, Plasmdium vivax, Plasmodium ovale, Plasmodium malariae and Plasmodium knowlesi.

Malaria can present in a mild uncomplicated form that is characterised by fever, headache, arthralgia, vomiting, malaise, sweating and splenomegaly. On the other hand a severe and complicated form exists that presents as severe anaemia, pulmonary oedema, seizures, coma and renal/respiratory effects. Brain effects can result in the death of 20% of even optimally treated individuals with residuals brain damage in some surviving children. Large numbers of individuals in endemic areas may harbour the parasite without obvious symptoms (subclinical infection); these individuals represent a reservoir during the dry season [2,3].

Under-nutrition is an underlying cause of malaria morbidity in children under the age of five [4]. Nutritional supplementation with vitamin A, zinc, selenium, iron and folate are reported to reduce malaria morbidity in children, probably through their effects on the immune system [5].

Immunity against malaria
The ability of humans to fight malaria relies on the presence of specialised immune cells that produce antibodies against malaria parasite proteins expressed on the surface of infected red blood cells (humoral immunity). Human immunity also relies on the production of cytokines, specialised proteins that arm immune cells and make them more capable of killing malaria parasites. In addition, specialised T-lymphocytes, namely CD8+ cells help the body to eliminate the parasite through destruction of infected cells (cellular immunity) [6,7].

Treatment of simple and complicated malaria
Chloroquine was the drug of choice for malaria treatment for some time, but this has dramatically changed due to the emergence of resistance in different parts of the globe. The same problem has occurred with other antimalarial drugs such as mefloquine, quinine and sulphadoxine [7,8]. Artesunate-based combinations are now used as first line treatment of simple malaria by many control programmes [10]. In addition, fixed-combination anti-malarials such as Dihydroartemsinin-piperaquine (DP) can effectively treat uncomplicated, multidrug-resistant falciparum malaria [11].

Intermittent preventive malaria treatment (IPT) using sulphadoxine/pyrimethamine has been shown to reduce the burden of malaria effectively in children in areas of seasonal transmission [12]. Supportive treatment is an important adjunct to antimalarial treatment (antipyretic, anticonvulsant and exchange blood transfusion) in severe P. falciparum malaria [13,14].

Control of malaria
Malaria morbidity and mortality can be markedly reduced with a sum of money not exceeding $ 3.0/adult. At the present time case detection and prompt treatment with artesunate-based combination drugs and the use of insecticide-treated bed nets (ITN) are the most effective control measures. ITN have proven to reduce malaria morbidity and mortality [10,15,16].

Counterfeit drugs
Counterfeit drugs present a major obstacle to malaria control programmes by prolonging morbidity and increasing mortality. About a third to one half of drugs sold in Africa and Asia are counterfeit drugs. There is some evidence that the problem of counterfeit drugs is increasing, especially in countries where regulatory authorities do not have the will to investigate and take action or do not have the necessary resources. However there is a lot of pressure not to publicise the issue of counterfeit anti-malaria drugs [17,18,19,20].

Vaccines against malaria
The ability of the malaria parasite evade the immune system is the main reason that no really effective vaccine has been produced to date. A number of the parasite molecules have been targeted as vaccine candidates in vain. Recently, the RTS,S/AS01 vaccine has been shown to provide protection against clinical and severe malaria in African children [21,22].

Conclusion
Better use of ITN, rapid and accurate diagnostic tests and the use of artesunate-based drug combinations can effectively control malaria. Counterfeit anti-malarials are a serious and under-estimated problem that could definitely cripple malaria control programmes in Africa and Asia.

References
1. WHO 2005. World Malaria Report.
2. Looareesuwan S et al. Lancet 1985; 2: 4-8
3. Reuben R. Soc Sci Med 1993; 37: 473–480.
4. Caulfield LE et al. Am J Trop Med Hyg 2004; 71 suppl 55-63.
5. Shankar AH. J Infect Dis 2000 182 (Supplement 1): S37-S53. doi: 10.1086/315906.
6. Goodhttp MF & Doolan DL. Curr Opin Immunol 1999; 11, 4, 412–419.
7. Stevenson M & Riley EM. Nature Rev Immunol 2004; 4, 169-180.
8. al-Yaman F et al. P N G Med J 1996; 39 :16-22.
9. Le Bras J & Durand R. Fundam Clin Pharmacol 2003; 17 :147-53.
10. WHO/MAL/94.1067. The role of artemisinin and its derivatives in the current treatment of malaria (1994-1995): report of an informal consultation convened by WHO in Geneva, 27-29 September 1993. Geneva: WHO 1994.
11. Ashley EA et al.. Clin Infect Dis 2005; 41 : 425-432. doi: 10.1086/432011.
12. Dicko A et al. Mal J 2008; 7:123 doi:10. 1186/ 1475-2875-7-123.
13. World Health Organization, Division of Control of Tropical Diseases. Severe and complicated malaria. Trans R Soc Trop Med Hyg 1990; 84: Suppl 2:1-65.
14. Hien TT et al. Trans R Soc Trop Med Hyg 1992; 86:582-583
15. Guerin PJ et al. Lancet Infect Dis 2002; 2 :564-573.
16. Frey C et al. Mal J 2006; 5:70.
17. World Health Organization. Report of the International Workshop on Counterfeit Drugs. 1998; WHO/DRS/CFD/98.1. Geneva: WHO.
18. Newton PN et al. BMJ 2002; 324: 800–801.
19. Dondorp AM et al. Trop Med Int Health 2004; 9: 1241–1246.
20. Rudolf PMM & Bernstein IBG. N Engl J Med 2004; 350: 1384–1386.
21. Plassmeyer ML et al. J Biol Chem 2009; 284 : 26951–63.
22. Agnandji ST et al. N Engl J Med 2011; 365: 1863-1875.

The authors
Prof. E.A.G. Khalil and Dr M.E.E. Elfaki
Department of Clinical Pathology
& Immunology

Institute of Endemic Diseases
University of Khartoum
Khartoum
Sudan

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BioVendor’s Range of Cardiovascular Disorder Biomarkers

, 26 August 2020/in Featured Articles /by 3wmedia
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p10 01

Early detection of acute kidney injury in sepsis: how about NGAL?

, 26 August 2020/in Featured Articles /by 3wmedia

Sepsis frequently results in acute kidney injury (AKI). Although AKI markedly contributes to mortality in sepsis, its diagnosis is frequently delayed due to limitations of current biomarkers of renal impairment. Neutrophil-gelatinase-associated lipocalin (NGAL) has been demonstrated to be a biomarker of early AKI. This review analyses the potential use of NGAL in sepsis.

by Dr W. Huber, Dr B. Saugel, Dr R. M Schmid and Dr A. Wacker-Gussmann

Pathophysiology, definition and epidemiology of sepsis
Sepsis is a clinical syndrome characterised by systemic inflammatory response to infection [1-2]. Incidence of sepsis has increased by a factor of four within the last three decades, with an estimated incidence of 650,000 cases per year in the USA. SIRS (systemic inflammatory response syndrome) describes a similar inflammatory reaction to non-infectious aetiologies such as poly-trauma, acute pancreatitis and burns. Apart from different aetiology, sepsis and SIRS share a common definition requiring two or more of four criteria of systemic inflammation (fever/hypothermia, tachycardia >90/min, tachypnoe >20/min or paCO2<32mmHg and leukocytosis (>12G/L) or leukopenia (<4G/L) [Table 1], [1-2]. Pathophysiology of sepsis is mainly attributed to imbalanced and generalised release of pro-inflammatory mediators resulting in impaired circulation, tissue injury and organ failures up to multiple-organ-dysfunction-syndrome (MODS). Despite strong evidence for therapeutic efficacy of early causative therapy (treatment of infection source), antibiotics and several supportive strategies, mortality from severe sepsis and septic shock remained up to 20-50% in recent sepsis trials [1-2]. There is an ongoing debate on the benefits of supportive strategies such as hydrocortisone, intensified-insulin-therapy and immunomodulation. However, there is strong consensus about the paramount importance of early sensitive diagnosis and staging of sepsis (severe sepsis and septic shock) in order to initiate appropriate monitoring and therapy as early as possible. In general, patients with severe sepsis will require intensive care and haemodynamic monitoring to optimise circulation. Diagnoses of severe sepsis and septic shock are mainly based on the evidence of organ failure and emphasize the impact of circulatory failure. The impact of different organ failures on outcome of ICU-patients is substantiated by numerous studies [1-5)]. Interestingly, renal and liver failure were among the organ failures with the most pronounced impact on outcome in several studies [3-5]. At first glance, this might be surprising. However, circulatory and respiratory failure can be easily detected at early stages of severe sepsis, and symptomatic therapy of these organ failures is the main target of intensive care. By contrast, renal and liver failure remain underrated and 'late-stage-diagnosed losses of organ function' in the development of MODS. Difficulties in early detection of renal and hepatic failure by traditional markers has probably also resulted in their under-representation in scoring-systems: Regarding renal failure, APACHE-II and the SOFA-score are mainly based on absolute serum creatinine values. However, the use of serum creatinine as a marker in these scores and particularly as an early marker of septic renal failure is limited by a number of drawbacks: serum levels of creatinine are dependent on age, gender, muscle mass and race. Furthermore, in case of impaired glomerular filtration, serum creatinine levels can be lowered by tubular secretion, which contributes to the phenomenon of the 'creatinine-blind-range' of renal failure: glomerular-filtration rate (GFR) can decrease to about 50% with serum creatinine levels staying within the normal range. Numerous formulae for GFR estimation slightly improve this drawback. However, GFR formulae are neither part of sepsis definitions nor are they included in SAPS-II, SOFA- and APACHE-II-score. Even the more recent Acute-Kidney-Injury-Network (AKIN) definition of AKI rejected GFR, which has been included in the previous RIFLE-classification (RIFLE: Risk, Injury, Failure; Loss, End-Stage Renal Disease). RIFLE and AKIN as well as the new KDIGO-definition (KDIGO: Kidney Disease: Improving Global Outcomes) are mainly based on changes in serum creatinine compared to baseline values, which are 'known or presumed to have occurred within the prior seven days' [6]. Comparison with a baseline value which is not known in a substantial percentage of patients remains a major problem of these definitions. In general, their usefulness is substantiated as consensus definitions for acute changes in renal function within 2-7 days after the first measurement of serum creatinine rather than being highly sensitive for early AKI. This also relates to the fact that increased serum creatinine on ICU admission of a septic patient might result from constant chronic renal impairment as well as acute renal failure in a patient with previously normal renal function. Both, acute and chronic renal impairment have been demonstrated to significantly influence outcome, albeit to a different degree, with patients with AKI more frequently requiring mechanical ventilation [4, 7]. In the context of sepsis, specification of renal impairment is particularly important: acute septic renal impairment results in markedly worse prognosis, classification as severe sepsis and intensified monitoring in an ICU. By contrast, stable chronic renal impairment in a patients just fulfilling two of the four sepsis criteria would be a minor risk factor contributing to outcome similar to older age. Being a marker of function rather than of injury remains the major drawback of serum creatinine for differentiation of renal impairment. Approaches to early detection of AKI
Systematic efforts have therefore been made to characterise markers of early renal injury. Using several established animal models of acute renal injury (e.g. ischaemia, nephrotoxic medication including contrast-medium), up-regulation of a number of potential genes has been demonstrated as a short-term reaction to experimental acute renal injury [8]. Among those up-regulated genes and a number of other biomarkers, NGAL, Kidney-Injury-Molecule-1 (KIM-1), interleukin-18 (IL-18) and cystatin C have been most intensively studied. Cystatin C provides characteristics most similar to creatinine: this marker is a cysteine proteinase inhibitor synthesised in all nucleated cells and freely filtered by the glomerulus. The major adavantages over serum creatinine are that cystatin C is not secreted by the tubulus and that it is not affected by age, gender, muscle mass and race. However, with increased levels of cystatin C resulting from accumulation due to decreased glomerular filtration, cystatin C remains as a marker of decrease in renal function rather than a biomarker of early kidney injury. Several studies suggest its slightly earlier (within 24h?) detection of AKI compared to serum creatinine.

Another ‘candidate molecule’ for early detection of AKI is IL-18, a pro-inflammatory cytokine that is induced in the proximal tubule and detected in urine after AKI. In clinical settings, increase in urinary levels within 6h and peak-values within 12h have been demonstrated in cardiopulmonary bypass patients with AKI after 48h according to serum creatinine.

KIM-1 is a transmembrane protein that is markedly over-expressed in the proximal tubule after ischaemic or toxic AKI. A number of clinical studies suggest earlier detection of AKI by KIM-1 compared to serum creatinine, e.g. with elevated urinary KIM-1 levels 12h after paediatric cardiac surgery and prediction of renal replacement therapy (RRT) and mortality in AKI.

NGAL
The most promising biomarker for early acute kidney injury at present is NGAL, which is the profuct of one of seven genes markedly up-regulated in a ischaemia-reperfusion mouse model [8]. NGAL is a 178 amino-acids polypeptide expressed by neutrophils and other epithelial cells including the proximal tubule. NGAL provides several physiological functions including bacteriostatic (depriving bacteria of iron essential for growth), antioxidant (stops free and reactive iron from producing oxygen free radicals) and growth-factor properties (regulates cell proliferation, apoptosis, differentiation). Furthermore, there is a possible rescue role in other epithelia (breast, uterus), and NGAL also is overexpressed in some epithelial tumours.

Regarding its potential clinical use, NGAL has been validated as an early biomarker of AKI induced by cisplatin, contrast-media and cardiac surgery as well as a screening marker for patients at risk in the emergency department (ED) and ICU. In these settings, urinary and plasma levels of NGAL after 2h-12h were significant predictors of AKI defined by later increases in serum creatinine within 24-48h. Depending on setting and methodology, best predictive capabilities of NGAL were found for cut-off values between 50 and 150 µg/L. In a large ED study in 635 patients, urinary NGAL levels clearly differentiated between acute (markedly elevated NGAL) and chronic (not elevated NGAL) renal impairment, whereas there was substantial overlap of serum creatinine values for both groups ([9].

These abilities to discriminate between acute and chronic renal impairment might be particularly useful in patients with sepsis [Figures 1 and 2]. With assessment of renal function in ICU patients based on serum creatinine, normal creatinine levels might be ‘false negative’ and will increase as late as after 48h. On the other hand, increased values of creatinine can result from stable chronic renal impairment. Misinterpretation of these values – ‘false positive’ for septic renal failure – might result in inappropriate allocation of resources, e.g. efficacy for most of the supportive measures in sepsis has been demonstrated predominantly for patients at high risk and with severe sepsis, whereas side effects might outweigh the benefits in patients with less pronounced sepsis.

A potential role for NGAL in sepsis has been suggested in several clinical studies. In 143 paediatric ICU patients Wheeler et al. demonstrated that septic shock, but not SIRS, resulted in a significant elevation of NGAL compared to controls [10]. Furthermore, NGAL on admission was significantly higher in children developing AKI within seven days after admission compared to children without AKI. Serum levels of NGAL and creatinine did not correlate on day one after admission.

A study in 971 ICU patients investigated the predictive capabilities of nine biomarkers on admission regarding severe sepsis within 72h. The best predictive capabilities were found for NGAL, whereas D-dimer, BNP and CRP were of limited use. A score based on NGAL, IL-1-receptor-antagonist and protein C levels significantly distinguished four groups of patients developing no sepsis, severe sepsis, septic shock and death [11]: the area under the curve for the score derived from these three biomarkers was 0.80 for severe sepsis, 0.77 for septic shock and 0.79 for death.

Another recent study found significantly elevated plasma NGAL levels within
4 hours after admission in septic as well as non-septic-patients with AKI according to RIFLE-criteria compared to patients without AKI [12]. Increases in NGAL were even more pronounced in septic compared to non-septic AKI patients. Similarly, urinary NGAL-levels were higher in septic compared to non-septic patients without AKI [13], suggesting that cut-off-values for NGAL to predict AKI might be higher than for non-septic patients.

In summary, clinical applications of NGAL in sepsis comprise early detection of AKI in patients with normal serum creatinine (NGAL+, crea-) compared to patients without renal impairment (NGAL-, crea-). Furthermore, NGAL might be useful to distinguish patients with stable chronic renal impairment (NGAL-, crea+) from patients with ongoing or ‘acute on chronic’ renal injury (NGAL+, crea+) [Figure 1].

With regard to sepsis, more sensitive detection of AKI (NGAL+, crea-) would result in staging as ‘severe sepsis’ instead of sepsis in patients without other organ failures [Figure 2]. Early detection of AKI might help to allocate additional causative (antimicrobial therapy, intervention) and supportive measures for sepsis as well as specific measures to prevent further renal damage. These attempts include intensified haemodynamic monitoring to optimise fluid load, avoidance of further nephrotoxic medications and procedures (contrast-application) or at least prophylactic approaches such as hydration or administration of theophylline or acetylcysteine [13]. Allocation of these resources according to significant predictors and avoidance of further renal impairment carries a high potential for cost effectiveness as emphasised by a number of studies.

Further studies are required to validate that early determination of NGAL improves diagnosis and outcome in septic and non-septic patients at risk of AKI. Future studies should also investigate if including NGAL into scoring (APACHE-II, SOFA, SAPS-II) systems improves their predictive capabilities.

References
1. Dellinger RP et al. Crit Care Med 2008; [published correction appears in Crit Care Med 2008; 36:1394-1396] 36:296-327.
2. German Sepsis Society. German Interdisciplinary Association of Intensive Care and Emergency Medicine. Prevention, diagnosis, therapy and follow-up care of sepsis: 1st revision of S-2k guidelines of the German Sepsis Society (Deutsche Sepsis-Gesellschaft e.V. (DSG)) and the German Interdisciplinary Association of Intensive Care and Emergency Medicine (Deutsche Interdisziplinäre Vereinigung für Intensiv- und Notfallmedizin (DIVI)). Ger Med Sci. 2010 Jun 28;8:Doc14.
3. Chertow GM et al. J Am Soc Nephrol 2005 Nov;16(11):3365-70.
4. Metnitz PG et al. Crit Care Med 2002 Sep;30(9):2051-8.
5. Kramer L et al. Crit Care Med 2007 Apr;35(4):1099-104.
6. KDIGO Clinical Practice Guideline Acute Kidney Injury. Kidney International Supplements 2012; 2: 1-138.
7. Walcher A et al. Ren Fail 2011;33(10):935-42.
8. Mishra J et al. J Am Soc Nephrol 2003 Oct;14(10):2534-43.
9. Nickolas TL et al. Ann Intern Med 2008 Jun 3;148(11):810-9.
10. Wheeler DS et al. Crit Care Med 2008 Apr;36(4):1297-303.
11. Shapiro NI et al. Ann Emerg Med 2010 Jul;56(1):52-59.e1.
12. Lentini P et al. Crit Care Res Pract 2012: 2012:856401. Epub 2012 Feb 14.
13. De Geus HR et al. Am J Respir Crit Care Med 2011 Apr 1;183(7):907-14. Epub 2010 Oct 8
14. Huber W et al. Radiology 2006; 239(3):793-804.

The authors
Wolfgang Huber MD, Bernd Saugel MD, Roland M Schmid MD
II. Medizinische Klinik und Poliklinik, Klinikum rechts der Isar der Technischen Universität München, Ismaningerstr. 22, D-81675 München, Germany
and
Annette Wacker-Gussmann MD
Universitätsklinik Tübingen, Kinderheilkunde und Jugendmedizin, Abteilung für Neonatologie, Calwerstr. 7, D72076 Tübingen, Germany

Correspondence to Wolfgang Huber
e-mail: wolfgang.huber@lrz.tu-muenchen.de; Tel: +0049 (0) 89 4140-5478

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C47a JeanCharlesClouet

The advent of molecular allergens heralds a new era in allergy diagnosis

, 26 August 2020/in Featured Articles /by 3wmedia

Recent advances in the understanding of the compositions and structures of allergens now make it possible to use allergenic components instead of allergenic extracts in allergy testing.
In this interview, Jean-Charles Clouet, Director of Assay Business Development & Scientific Marketing at Siemens Healthcare Diagnostics, discusses the role of these molecular allergens in allergy diagnosis.

Q. What is the prevalence of allergies, and are there any geographical disparities?
Allergic diseases and asthma represent a growing and major healthcare challenge worldwide, as reported by the recent World Allergy Organization (WAO) White Book. [1] The authors confirm the steady increase of allergic diseases during the last decades that now affect approximately 30–40% of the industrialized world’s population, with an especially high percentage among the youngest subjects (40–50% of school-aged children are sensitized to one or more common allergens).

For example, allergic rhinitis is one of the most common allergic conditions, impacting roughly 500 million people of all social classes and ages globally. [2] In Europe, a study showed allergic rhinitis prevalence at approximately 25%. [3,4] It is important to note that, although direct costs induced by allergic rhinitis are limited, the condition affects subjects’ quality of life and has significant impact on performance at work or school. Therefore, its overall economic impact is probably underestimated. [2]

Another recent study, this one surveying more than 38,000 children (up to 18 years old) in the United States, reported that 8% had food allergy, including a rate of about 6% for those aged 0-2 years, and more than 8.5% for those aged 14-18 years. [5] Worldwide, it is estimated that 220–520 million people may suffer from food allergy. [1]

These statistics illustrate the high prevalence of allergy worldwide and why the World Health Organization (WHO) ranks allergy as the fourth most common global chronic disease. [6]

Q. What are the most common clinical manifestations of allergy that demand further testing?
Subjects suffering from allergic diseases tend to develop IgE-mediated immune reactions to normally harmless substances called allergens. These can include tree pollens, grasses and weeds; foods; mites; animal danders; molds; insects; and drugs. Associated clinical manifestations range from mild to severe and affect the upper and lower airways, gastrointestinal tract and skin. The consequent allergic diseases may include rhinitis, asthma, allergic conjunctivitis, atopic eczema, food allergy, insect allergy, drug allergy and anaphylaxis. Some can even be fatal, in the cases of allergic reactions to certain foods, insect venoms or drugs.

The model for the “Allergy March” published in the late 1990s emphasized that the most common forms of allergic diseases in early infancy are gastrointestinal symptoms and skin conditions (e.g., atopic dermatitis) caused by food proteins, such as hen’s egg and cow’s milk. [7] Additionally, IgE reactivity to food allergens in early infancy is a strong predictor for reactivity to respiratory allergens later in childhood. Other forms, such as allergic rhinitis and reactions to aeroallergens, happen later in life (1–10 years).

In 2003, the European Academy Of Allergy and Clinical Immunology (EAACI) published a position paper on allergy in children recommending testing for all subjects with severe, persistent or recurrent “allergic symptoms” (irrespective of age), along with those requiring a prophylactic treatment,. Proposals to select relevant allergens based on the subject’s age were provided. [8] Additional position papers are available for other forms of allergic reactions, such as drug allergy (causing 20% of deaths due to anaphylaxis) or insect allergy (fatal reactions in up to 50% of individuals with no documented history of reaction). [3]

Q. What are the current testing methods?
The objectives of allergy diagnosis are to identify both the symptoms’ origin (i.e., is the reaction IgE-mediated?) and the offending allergen(s). Allergy diagnosis is multi-factorial and includes a detailed case history and in vivo (i.e., skin tests) and/or in vitro (i.e., allergen-specific IgE measurements) testing. For some allergens (e.g., foods), oral challenges may also be performed to support diagnosis of food allergy.

Skin tests and blood tests, performed by allergists and laboratories respectively, present their own advantages and limitations. Skin tests are highly sensitive, with results immediately available for the patient. However, patients must discontinue medications (e.g., antihistamine) prior to testing, and interpretations of skin-test results are highly subjective and depend largely on operator skills. In vitro tests have the advantage of providing precise, quantitative results for each allergen, validated through extensive internal and external quality-control procedures and programs.

It is important to note that “allergens” used for in vivo and in vitro testing procedures are still primarily allergenic extracts. Obtained by extraction of proteins from crude allergenic sources, these extracts consist of a mixture of known and unknown proteins. Due to molecular-biology techniques and research begun in the 1980s, it is now possible to better understand compositions and structures of allergens, to classify them into families of proteins and to obtain for a significant number of them more qualified and standardized materials called “molecular allergens” or “allergenic components.” Whether highly purified in native form from the allergenic source or produced via recombinant protein expression techniques, molecular allergens have ushered in a new era in allergy diagnosis.

Q. What is the role of molecular allergens in allergy testing?

Allergenic extracts allow the detection of specific IgE directed against an allergenic source. In contrast, molecular allergens permit detection of precisely specific IgE directed against the disease-eliciting component(s) of the allergenic source. Therefore, measurements of specific IgE against molecular allergens yield additional key information that cannot be obtained by testing allergenic extracts. In particular, use of molecular allergens can help allergists define a more personalized and relevant sensitization profile for each patient.

For example, testing with molecular allergens makes it possible to determine if a patient’s sensitization is genuine (i.e., specific to one allergenic source) or comes from a cross-reactivity to proteins that have similar structures and are present in different sources. This is an important consideration when assessing a patient’s risk of reaction to some allergic sources and recommending appropriate avoidance measures. Allergenic molecules can also help clinicians assess the severity of a patient’s allergic reaction and, in the case of food allergy, decide whether or not to perform an oral food challenge. Finally, allergenic molecules can help clinicians identify patients who will benefit from immunotherapy treatment and decide which allergens should be used for treatment.

Q. Is this new technology likely to shift the burden of allergy testing towards the lab and away from in vivo (i.e., skin-based) testing?
In vitro testing is an accurate complement or alternative to skin testing for most allergens. However, despite their growing number, molecular allergens are not yet available for all types of allergens. Using allergenic extracts in conjunction with in vitro and/or skin testing is still the only option for a large number of
allergenic sources.

Q. In your view, what is the ideal sequence of tests to optimize the early diagnosis and treatment of allergy?
First of all, it’s important to raise awareness among the public and in the physician community of the importance of early diagnosis to better prevent and treat allergic diseases. Equally important is educating both clinicians and the public on the availability of new diagnostic tools, such as molecular allergens, along with the best way to leverage them to improve patient care.

An “ideal sequence” should begin with a careful and detailed case history taken by an allergist. This is critical in deciding whether further testing is necessary. Also, the results of specific IgE measurements should always be analysed in conjunction with the patient’s clinical history, since an allergen sensitization does not necessarily imply a clinical responsiveness.

If the clinical history suggests an allergic reaction, the clinician generally will request detection of specific IgE against the suspected allergens. Testing will then be performed using allergenic extracts in most cases. The reason is that allergen extracts are complex heterogeneous mixtures made of major and minor allergenic determinants. In some instances, a few molecular allergens will be enough to replace the corresponding allergenic extract. Unfortunately, this is not the case for sources with more complex compositions and in situations in which as-yet unidentified determinants (even minor ones) could be of clinical importance for particular patients. Also, as already mentioned, allergenic components have not yet been developed for a large number of allergenic extracts.

Therefore, in the majority of cases, testing allergenic extracts as a first step is the best or perhaps the only option to detect all sensitized patients. If specific IgE against the allergenic extract are found, relevant molecular allergens should then be tested to provide more information, as explained above.

References
1. World Health Organization. White Book on Allergy 2011-2012 Executive Summary. By Prof. Ruby Pawankar, MD, PhD, Prof. Giorgio Walkter Canonica, MD, Prof. Stephen T. Holgate, BSc, MD, DSc, FMed Sci, and Prof. Richard F. Lockey, MD.
2. Bousquet J, et al. Allergic rhinitis and its impact on asthma (ARIA) 2008 update (in collaboration with the World Health Organization, GA(2)LEN and AllerGen). Allergy. 2008;63 Suppl 86:8-160.
3. Bauchau V, Durham SR. Prevalence and rate of diagnosis of allergic rhinitis in Europe. Eur Respir J. 2004;24:758–764.
4. Bauchau V, Durham SR. Epidemiological characterization of the intermittent and persistent types of allergic rhinitis. Allergy. 2005;60:350–353.
5. Gupta, R, et al. The prevalence, severity and distribution of childhood food allergy in the United States. Pediatrics. 2011;10.1542/ped.2011-0204.
6.I nternational classification of diseases (ICD). http://www.who.int/classifications/icd/en/.
7. Kulig M, Bergmann R, Klettke U, Wahn V, Tacke U, Wahn U. Natural course of sensitization to food and inhalant allergens during the first 6 years of life. J Allergy Clin Immunol. 1999;103:1173–1179.
8. Host, et al. Allergy testing in children: why, who, when and how? Allergy. 2003:58:1-11.

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Malaria: rapid and precise diagnosis saves lives

, 26 August 2020/in Featured Articles /by 3wmedia

Malaria is an acute and life threatening infection in individuls with no previous immunity. Symptoms are nonspecific and cannot be distinguished from those of influenza or severe bacterial infections. All febrile patients should thus be asked if they have been travelling over the past six months and if so whether the journey was to a malaria endemic area.
Microscopic examination of Giemsa stained thick and thin blood films remains the gold standard, but rapid tests using antigen-capture assays are increasingly used where access to expert microscopy is not available. The appropriate use of rapid tests and their limits are discussed.

by Dr Eskild Petersen

Malaria is caused by a protozoan parasite and five species can infect humans: Plasmodium falciparum, P. vivax, P. ovale, P. malariae and P. knowlesi. Humans are infected by bites of Anopheles mosquitoes and humans are the reservoir hosts except in the case of P. knowlesi, which is transmitted from monkeys and is only seen in South East Asia. Infection with P. falciparum shows the highest mortality and drug resistance is much more common in P. falciparum compared to P. vivax, and not a problem in the other malaria species. P. ovale and P. vivax have persistent liver forms, hypnozoites, which may reactivate, usually within six months after infection, and give rise to a malaria attack.

Malaria in Europe
Malaria was endemic in Europe up to the middle of the 20th century [Table 1]. Presently malaria is almost exclusively imported, although a number of Plasmodium vivax cases were seen in Greece in 2011, probably introduced with migrant workers from endemic areas [1]. It is estimated that between 10,000 and 15,000 cases of malaria are imported into Europe every year, which makes the recognition of symptoms and knowledge of appropriate diagnosis important.

A special risk group is immigrants resident in Europe who visit their home countries where malaria is found. The proportion of imported malaria cases in immigrants in Europe has increased from a reported 14% more than 10 years ago to 86% in more recent studies [2]. More than five million African immigrants could be living in Europe, one third of whom are from Sub-Saharan Africa [3], and children of immigrants are particularly at risk [4].

Mortality of imported malaria
The mortality from imported Plasmodium falciparum malaria cases varies from 0.4% in a large cohort from France [5], up to 5% in a recent cluster of cases imported from The Gambia [6]. Malaria infection in non-immunes is an emergency which requires prompt diagnosis and treatment while asymptomatic malaria in immigrants raises other public health issues.

Clinical symptoms
Individuals without immunity, i.e. persons who have not lived in malaria endemic countries for a long time, normally have a febrile illness with an acute onset. The symptoms include fever, malaise, muscle and joint pains, headache and rarely respiratory distress and diarrhoea. Malaria infection can be complicated by bacterial septicaemia. As the infection progresses there can be drowsiness, coma, kidney failure, disseminated intravascular coagulation and low blood pressure, and in the non-immune the mortality of untreated P. falciparum malaria is probably more than 50%.

P. falciparum in non-immunes does not usually follow a regular cyclic pattern and the fact that fever is not cyclic with a 48 or 72 hour cycle cannot be used to exclude malaria. Malaria in non-immunes is a medical emergency and diagnosis should be performed without delay.

In semi-immunes the clinical symptoms may be much more discrete and the development more subtle. Immunity to malaria is not a sterile immunity and a low level parasitaemia is seen in semi-immune individuals, ie. individuals from malaria endemic areas [7]. A special risk group is pregnant women from malaria endemic areas who are at greater risk of clinical malaria during pregnancy [8].

Malaria parasites may persist in asymptomatic immigrants long after their arrival in the host country, and malaria can be transmitted, for instance by blood transfusion or organ transplantation.

Who should be tested for malaria?
Diagnostic tests for malaria infection should be performed in any febrile patients who have a history of exposure, which includes patients with a history of travel in malaria endemic areas, as defined by the WHO.

However, rare modes of transmission mean that patients with fever but without a travel history to endemic areas should be tested. This includes so called ‘airport malaria’ where Anopheles mosquitoes carrying malaria parasites are transported in an airplane, leave the destination and take a blood meal from someone living close to the airport [9,10]. Malaria parasites can be transmitted in blood when sharing instruments used for intravenous drug abuse [11]. Transmission of malaria by blood transfusions from asymptomatic carriers is a huge problem in tropical Africa [12] and febrile patients with a history of receiving blood transfusion from a donor in a malaria endemic area should be suspected of having malaria until it is proven otherwise.

Diagnostic procedures for detecting malaria parasites
Traditionally malaria diagnosis rests on the microscopic examination of thick and thin blood films, but over the past decades, rapid tests based on antigen capture are increasingly used. However, rapid test have pitfalls and parasite density must be measured and followed to monitor the response to treatment. Thus microscopy is still a mandatory skill in institutions taking care of malaria patients.

Microscopic examination of Giemsa stained thick blood films remains the gold standard because it is rapid, easy to perform and sensitive [13] with a sensitivity down to five parasites per microlitre of blood [14]. Microscopy and counting of malaria parasites in patients are mandatory to assess the response to treatment and must be available at centres managing patients with malaria.

Rapid test are available which show a 100% sensitivity down to a parasite density level of 200 parasites per microlitre, equivalent to a parasitaemia of approximately 0.004% [15]. Molecular diagnosis by polymerase chain reaction (PCR) can detect parasites down to a density of 0.01 parasites per microlitre after a lysis procedure, and 1 parasite per microlitre without lysis [16]. However, PCR analysis is not instantly available around the clock so in practice diagnosis relies on rapid diagnostic tests and microscopy of Giemsa stained thick blood films.

Rapid tests are increasingly used in medical centres with limited access to experienced microscopists. However, a rapid test cannot determine the parasite density and rapid tests have limitations. False negative results in patients with very high parasite densities have been described, probably due to the so called ‘pro-zone’ phenomena known from other diagnostic tests [17, 18]. The problem seems to be limited to tests based on detection of the Histidine Rich protein 2, HRP2, and not tests based of detection of Plasmodia LDH, Lactate Dehydrogenase [15, 17]. Mutations in the HRP2 gene may also result is false negative results [19, 20]. All species ie. P. falciparum, vivax, ovale and malariae and P. knowlesi, will be found with tests based on the detection of pan-malarial aldolase antigen aldolase and LDH antigens [21]. P. ovale can be divided in variant and classic P. ovale [22], and variant P. ovale is not picked up in HRP2 based rapid diagnostic tests [23].

Thus clinicians using rapid tests should be instructed that no test so far is 100% reliable. In order to reduce the risk of false negative results, testing should be performed at least twice with 24 hours in between and preferable three times within a 24 hours interval. Variant P. ovale and P. knowlesi infections will be detected by rapid tests, which include those incorporating the pan plasmodia antigens Aldolase or Lactate Dehydrogenase antigens [15, 24]. The latest results of the WHO multicentre evaluation of different rapid diagnostic tests showed that the best performance was found in tests based on a combination of the HRP2 and PLDH proteins [15].

References
1. Danis K et al. Euro Surveill 2011;16:19993.
2. Jelinek T et al. Clin Infect Dis 2002; 34:572-576.
3. Eurostat. European Commission. Katya Vasileva. Population and social conditions. 34/2011. Available at: http://epp.eurostat.ec.europa.eu/cache/ITY_OFFPUB/KS-SF-11-034/EN/KS-SF-11-034-EN.PDF
4. Stäger K et al. Emerg Infect Dis 2009; 15:185–91.
5. Bruneel F et al. PLoS One 2010; 5(10):e13236.
6. Jelinek T et al. Euro Surveill.- 2008;13:19077.
7. Wertheimer ER et al. Emerg Infect Dis 2011;17:1701-3.
8. D’Ortenzio E et al. Emerg Infect Dis 2008;14:323-6.
9. Thang HD et al. Neth J Med 2002;60:441-3.
10. Tatem AJ et al. Malar J 2006;5:57.
11. Chau TT et al. Clin Infect Dis 2002;34:1317-22.
12. Noubouossie D et al. Transfus Med 2012;22:63-7
13. Bowers KM et al. Malar J 2009;8:267.
14. Petersen E et al. Am J Trop Med Hyg 1996; 55:485-489.
15. WHO. Rapid Diagnostic Tests. Results of round 3.http://www.who.int/tdr/publications/tdr-research-publications/rdt_round3/en/index.html Geneva 2011 (Accessed 17th March 2012).
16. Mahajan B et al. Transfusion 2012 Feb 10. doi: 10.1111/j.1537-2995.2011.03541.x. [Epub ahead of print].
17. Luchavez J et al. Malar J 2011;10:286.
18. Gillet P et al. Malar J 2011;10:166.
19. Koita OA et al. Am J Trop Med Hyg 2012;86:194-8.
20. Baker J et al. PLoS One 2011;6:e22593.
21. Chiodini PL et al. Trans R Soc Trop Med Hyg 2007; 101:331-337.
22. Sutherland CJ et al. J Infect Dis 2010;201:1544-1550.
23. Tordrup D et al. Malar J 2011;10:15.
24. Hellemond JJ van et al. Emerg Infect Dis 2009;15:1478–1480.
25. Bruce-Chwatt LJ, Zulueta J de. The rise and fall of malaria in Europe. Oxford University Press. 1980.

The author
Dr Eskild Petersen
Department of Infectious Diseases
Aarhus University Hospital
Skejby
Aarhus
Denmark
Tel +45 7845 2817
e-mail: joepeter@rm.dk

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