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Archive for category: Featured Articles

Featured Articles

C76 Table1

Recent advances and perspectives in the molecular diagnosis of pneumonia

, 26 August 2020/in Featured Articles /by 3wmedia

Despite some limitations, current molecular diagnostic methods have a great potential to include targets useful in the rapid identification of microorganisms and antimicrobial resistance, to analyse directly unprocessed samples and to obtain quantitative results in pneumonia, an entity of complex microbiological diagnosis due to the features of the pathogens commonly implicated.

by Dr A. Camporese

A change in culture without culture?
Developing accurate methods for diagnosing respiratory tract infections has long been a challenge for the clinical microbiology laboratory [1].

The current semi-quantitative agar-plate based culture method used in most clinical microbiology laboratories for analysing specimens from patients with suspected community-acquired pneumonia (CAP), hospital-acquired pneumonia (HAP), or ventilator-associated pneumonia (VAP), although adequate for recovering and identifying a wide variety of bacterial species from respiratory specimens, is slow, and cannot differentiate between colonization and infection. Moreover, results may be misleading, particularly if a Gram stain is not performed in parallel to ascertain the adequacy of expectorated sputum samples or endotracheal aspirates [2].

As the Infectious Diseases Society of America (IDSA) and American Thoracic Society (ATS) CAP guideline notes, one of the problems with diagnostic tests for respiratory tract infections “is driven by the poor quality of most sputum microbiological samples and the low yield of positive culture results” [3]. Moreover, the highest predictive value of a culture occurs only when Gram stain shows a predominant morphotype, and the culture yields predominant growth of a single recognized respiratory pathogen of that morphotype (e.g., Streptococcus pneumoniae) [2].

Unfortunately, such concordance decreases rapidly when specimens are collected after the initiation of antimicrobial therapy or when their arrival at the microbiology laboratory is significantly delayed.

One approach that may improve the diagnosis of respiratory tract infections and shorten the time necessary to place patients on appropriate therapy is the use of nucleic acid amplification methods.

Straight ahead toward molecular assays
Today clinical microbiologists appear to be on the threshold of a potentially important transition, with a substantial increase in the use of molecular diagnostic tests to replace or augment the century-old methods of culture, as many experts now view traditional microbiology as slow and antiquated, especially when compared with newer technologies used in other areas of laboratory medicine [4].

Traditional methods demonstrated poor sensitivity and specificity for detecting specific pathogens, particularly when the specimen being cultured is from a non-sterile anatomical compartment, such as the respiratory tract.

For this reason, molecular methods are becoming more widely used also for the detection of respiratory pathogens, in part because of their superior sensitivity, relatively rapid turnaround time, and ability to identify pathogens that are slow growing or difficult to culture.

However, to have a positive impact on patient management, molecular tests will need to be easy to use, and provide clear, definitive results that will give physicians the data necessary to start, or in some cases withhold, antimicrobial agents [5].

Further, to be really successful, industry must determine which combination of molecular targets [Table 1] and clinical specimens will produce results that will effectively guide anti-infective therapy regimens for patients with pneumonia or other respiratory tract diseases.

Another key challenge for industry will be to develop assays that are not only rapid, but also readily accessible, because development of an assay that is rapid, but unavailable on evening or night shifts, or at weekends, because of its technical complexity, limits the clinical value of the test.

Moreover, to be successful, molecular assays will need to be perceived by health care systems as cost-effective, but cost-effectiveness should be determined not only by comparison to the costs of performing slower, conventional methods in the laboratory, but also by consideration of the cost savings achieved from optimized antimicrobial therapy, decreased use of additional diagnostic tests, and shorter hospital stays [2].

To address issues on these topics, the IDSA and the Food and Drug Administration (FDA) co-sponsored a workshop on molecular diagnostic testing for respiratory tract infections in November 2009, with the participation of the FDA, industry, authorities in microbiology, statisticians and others. Respiratory tract infections were selected because this is the site of most infections treated with antibiotics in paediatric and adult practice, and they also represent a group of infections in which an etiologic agent is seldom identified in non-research settings [4].

The IDSA believes that patient care could be improved by accurate and rapid identification of pathogens, which would promote more judicious use of antibiotics, permit pathogen directed therapy, and provide potentially important
epidemiologic information.

Thus, the IDSA strongly desires development and implementation of molecular diagnostic tests that are easy, rapid, technically uncomplicated, applicable to specimens that are readily obtained, reasonably priced, sensitive and specific, because such tests will greatly improve antimicrobial stewardship, thereby helping to reduce the spread and impact of antibiotic resistance. Such tests will also facilitate conduct of clinical trials supporting the approval of new antibacterial agents [4].

Respiratory samples suitable for molecular assays
A variety of respiratory samples are amenable to molecular testing, including expectorated sputum, bronchoalveolar lavages (BALs), protected bronchial brushes, and endotracheal aspirates [2, 5, 6]. Of these, expectorated sputum samples are by far the most common respiratory samples submitted to the clinical microbiology laboratory, but are also the poorest in overall quality.

Endotracheal aspirates from ventilated patients are often of better quality than that of expectorated sputum obtained from patients with CAP/HAP, but may still be contaminated with upper respiratory tract flora.

Therefore, obtaining specimens from the site of infection that are not contaminated with upper respiratory tract flora remains to date a real and constant problem. BALs and protected brush samples seem more likely to yield samples from the site of infection, but require significantly more effort to obtain, and thus offer a much smaller market for a new molecular test.

Moreover, there is a significant gap in our knowledge as to how well molecular tests for bacterial pathogens would perform on expectorated sputum samples, compared with performance on BALs or protected brush samples from the same patient collected within a similar period [2].

This knowledge gap is also a barrier to test development, because a molecular test that cannot be performed on expectorated sputum (given all the problems with specimen quality) may not have broad enough appeal among physicians to make it a financially viable product (from the industry perspective).

Technology perspectives
There are a wide array of emerging technologies for the detection and quantification of respiratory pathogens directly from clinical specimens. Some of these technologies, such as real-time PCR, have potential for high-throughput testing, and others will allow rapid near patient testing, but more studies are needed to fully determine their performance characteristics and determine their ideal clinical application [6,7].

Molecular assays may target either a single pathogen or multiple respiratory pathogens in a single assay. There are merits to both single-pathogen and multiplex approaches. Certain bacterial respiratory pathogens cause such distinct clinical syndromes that assays that target them individually still have clinical utility. These include already many organisms, such as Chlamydophila pneumoniae, Mycoplasma pneumoniae, Legionella pneumophila, or Bordetella pertussis [Table 1].

Moreover, some multiplex assays for respiratory tract disease already include many targets for a rapid diagnosis of CAP, HAP, and VAP, but, in designing new assays, it will be critical to understand whether an assay for a determined number of bacterial pathogens will meet physicians’ needs and provide adequate data for initiating or altering anti-infective therapy [7, 8].

Potential and currently available targets for multiplex or individual molecular assays for respiratory tract samples in immunocompetent and/or immunocompromised patients with CAP, HAP, or VAP are presented in Table 1 [7].

Further, in this age of multidrug resistance, expanding the target selection to include key antimicrobial resistance genes that would alter existing therapy or guide empirical therapy, should also be considered [Table 1].

Lastly, if molecular-based diagnostic methods currently available are helpful in detecting single and multiple bacterial pathogens simultaneously, including the most frequent cause of CAP/HAP/VAP, the real-time PCR is also well known for its ability to quantify targets.

Where available, the application of quantitative molecular tests for the detection of key pathogens, such as S. pneumoniae, both in sputum and in blood, defining a threshold for classification, such as a colonizer or as an invasive pathogen, might be relevant in CAP patients, mainly in whom antibiotic therapy has been initiated, and might be a useful tool for severity assessment [9, 10].

Conclusion
Significant progress exists on the development and improvement of molecular-based methods feasible to be applied to the diagnosis of lower respiratory tract infection.

Multiplex assays, user-friendly formats, results in a few hours, high sensitivity and specificity in pathogen identification, detection of antibiotic resistance genes and target quantification, among others, are some of the contributions of novel molecular-based diagnosis approaches.

Developing new molecular tests for other bacterial respiratory pathogens, particularly microorganisms that can be both asymptomatic colonizers and overt pathogens of the respiratory tract, detection of pathogens and new key antimicrobial resistance genes in unprocessed samples, and determination of the microbial load by quantitative multi-pathogen tests will be some of the future challenges of molecular diagnosis in CAP/HAP/VAP.

References
1. Bartlett JG. Decline in microbial studies for patients with pulmonary infections. Clin Infect Dis 2004; 39: 170–172.
2. Tenover FC. Developing molecular amplification methods for rapid diagnosis of respiratory tract infections caused by bacterial pathogens. Clin Infect Dis 2011; 52(S4): S338–S345.
3. Mandell LA, Wunderink RG, Anzueto A, et al. Infectious Diseases Society of America/American Thoracic Society consensus guidelines on the management of community-acquired pneumonia in adults. Clin Infect Dis 2007; 44(S2): S27–S72.
4. Infectious Disease Society of America (IDSA). An unmet medical need: rapid molecular diagnostics tests for respiratory tract infections. Clin Infect Dis 2011; 52(S4): S384–S395.
5. Caliendo AM. Multiplex PCR and emerging technologies for the detection of respiratory pathogens. Clin Infect Dis 2011; 52(S4): S326–S330.
6. Lung M and Codina G. Molecular diagnosis in HAP/VAP. Curr Opin Crit Care 2012; 18: 487–494.
7. Camporese A. Impact of recent advances in molecular techniques on diagnosing lower respiratory tract infections (LRTIs). Infez Med 2012; 4: 237–244.
8. Johansson N, Kalin M, Tiveljung-Lindell A, et al. Etiology of community-acquired pneumonia: increased microbiological yield with new diagnostic methods. Clin Infect Dis 2010; 50: 202–209.
9. Werno AM, Anderson TP, Murdoch DR. Association between pneumococcal load and disease severity in adults with pneumonia. J Med Microbiol 2012; 61: 1129–1135.
10. Woodhead M, Blasi F, Ewig S, et al. Guidelines for the management of adult lower respiratory tract infections-Full version. Clin Microbiol Infect 2011; 17(S6): E1–E59.

The author
Alessandro Camporese MD
Clinical Microbiology and Virology Department
S. Maria degli Angeli Regional Hospital, Pordenone, Italy

E-mail: alessandro.camporese@aopn.fvg.it

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C93 Fig1

The use of MS for the investigation of irritable bowel syndrome and inflammatory bowel disease

, 26 August 2020/in Featured Articles /by 3wmedia

Currently, the diagnosis of bowel diseases such as irritable bowel syndrome (IBS) and inflammatory bowel disease (IBD) relies on invasive and expensive procedures. Identification of biomarker-based tests to aid diagnosis is an important area of research. Here we review the use of mass spectrometry in this search and discuss recent findings.

by Dr B. De Lacy Costello, Professor N. M. Ratcliffe and S. Shepherd

Inflammatory bowel disease (IBD) is an inflammatory autoimmune disease caused by an inappropriate response of the immune system to commensal gut microbes [1]. There are two types of IBD, ulcerative colitis (UC) and Crohn’s disease (CD). UC affects the large bowel only, affecting variable lengths of the colon continuously from the rectum, primarily affecting the mucosa [Fig. 1]. CD can affect any part of the GI tract, and is a transmural disease [2]. Common symptoms of IBD are severe abdominal pain, defecation urgency and diarrhoea, which can contain blood.

Irritable bowel syndrome (IBS) is a functional disorder of the digestive tract. It is characterized by its symptoms, with no physiological changes in the GI tract. IBS can be diarrhoea predominant (IBS-D), constipation predominant (IBS-C) or symptoms can alternate between the two (IBS-A). Common symptoms include abdominal pain and cramps, bloating and flatulence, and unusual bowel habit. IBS has, as yet, no known cause. People with IBS show abnormal gut motility and hypersensitivity to pain in the GI tract. Stress and anxiety are known to cause changes in gut motility [3] with stress and anxiety being common symptoms of IBS. When under physical or psychological stress IBS patients showed increased gastro-intestinal sensitivity when compared to healthy controls [4]. Recently it has been thought that there may be changes in the gut microbiota in patients with IBS, the evidence being that IBS symptoms often occur after infective gastroenteritis or in patients in remission from IBD or diverticulitis. SIBO (small intestinal bowel overgrowth) has also been implicated in IBS and other function bowel disorders. One current hypothesis is that an altered microbiota activates the immune system within the mucosa, leading to an increase in epithelial permeability, causing dysregulation of the enteric nervous system [5]. Genome-wide association studies have successfully identified many genetic loci involved in susceptibility to IBD, and it is thought that genetic factors may also play a role in IBS [1].

Diagnosis of GI disease
IBS-D can present with symptoms similar to IBD and other non-functional bowel conditions. The diagnosis of IBS is often one of exclusion, where more serious bowel diseases, such as IBD or colon cancer which present with common symptoms, are ruled out. The current gold standard for diagnosis of IBD is endoscopic and histological testing; however, these investigations are both invasive and costly, and have associated risks. Of the patients referred for endoscopy few actually have organic bowel disease [6]. The costs associated with functional bowel disease are significant, with healthcare costs for IBS patients being significantly higher than non IBS controls [7].

There are currently no known biomarkers of IBS. There are various biomarkers that have potential in the differentiation of functional from inflammatory gastrointestinal disease, but there is still a need to identify biomarkers and to develop quicker, lower cost and less invasive testing for diagnosis of gastro-intestinal disease.

Biomarkers such as lactoferrin, calprotectin, c-reactive protein (CRP) and erythrocyte sedimentation rate (ECR) have all been used to help distinguish functional from inflammatory bowel disorders and to diagnose IBD. Serological markers such as antibodies to bacterial and fungal antigens that can indicate an abnormal response to commensal microbes can also be useful in identifying IBD.

Fecal calprotectin and lactoferrin are protein biomarkers of inflammation. In 2010 a meta-analysis of six studies (n=670) in adults by Van Rheenen et al. [8] found that screening patients by testing fecal calprotectin levels would have reduced the number of endoscopies performed by 67%, although its diagnosis would have been delayed in 6% of patients. When taking a weighted mean of 19 studies including 1001 patients, where IBD patients were compared with controls of IBS and other colonic diseases, fecal lactoferrin has a sensitivity and specificity of 80% and 82%, respectively [9].

Although these biomarkers can be useful as part of the screening process when establishing a diagnosis [6, 8], there is currently no biomarker or test that can replace the need for endoscopic and histological investigations. Mass spectrometry techniques are at the forefront of research for biomarker prospecting for IBS/IBD.

Mass spectrometry

Mass spectrometry (MS) has the ability to identify numerous compounds in a single sample. It is also high throughput allowing rapid analysis of many samples, which is especially useful for large studies or for the diagnosis of many samples. The ability to obtain results quickly, usually in less than 1 hour makes it attractive for clinical use.

Proteomic approach

Although MS (with associated sample vaporisation methods) was originally limited to low molecular weight volatile compounds, in the last 2 decades advances in MS technology have enabled its use with high molecular weight compounds, changing the way proteins are analysed. The soft ionization techniques electrospray ionization (ESI) and matrix-assisted laser desorption/ionization (MALDI) allow for the analysis of proteins and other macromolecules [10]. The identification of proteins through peptide mass fingerprinting, or peptide sequencing using MS is more rapid than techniques such as de novo protein sequencing and data can be analysed automatically. MS can also be used to determine the abundance of a molecule in a sample [10].

Differential protein expression can identify different diseases, and can indicate the degree of the disease state, or be used to assess the effects of treatment – for example the response of IBD patients to anti-TNF alpha antibodies (infliximab) [11]. It also has applications in the identification of protein biomarkers.

In 2011 MALDI-MS was used by M’koma et al. for tissue analysis; through profiling of the proteome of the colonic submucosa they were able to distinguish UC from CD by comparing proteomic spectra. Definitive diagnosis of either UC or CD is important as people with UC also have an increased risk of colon cancer [12].

Goo et al. have investigated protein biomarkers for IBS. ESI with LC-MS was used on protein fragments from the urine of women with IBS. They found differences in some specific components of the urinary proteome, and demonstrated that there is a possibility for future biomarker studies for IBS [13].

There are still limitations to mass spectrometric protein analysis, for example the difficulty in detecting hydrophobic membrane proteins. However, it seems promising that, with the advances in mass spectrometry technology, there will be an increase in the discovery of protein biomarkers and key pathogenic factors of gastro–intestinal disease, and improved diagnosis and therapy.

Metabolomic approach
The metabolome is the set of small molecule metabolites found in a biological sample. Unlike proteomics, metabolomics can be a direct measure of production of compounds and activity of cells or systems in an organism. This can be especially useful when looking for disease biomarkers in IBS and other bowel diseases as it can be used to understand the environment of the GI tract, as well as factors such as digestion and absorption of dietary products and gut microbial activity [14], which are implicated in IBS pathogenesis.

Researchers have explored the use of various techniques incorporating MS on breath [15], urine [16] and stool [17] samples in search of metabolic biomarkers of bowel disease for non-invasive testing and many possible candidates have been identified.

The commonly used analytical techniques in metabolomics are GC-MS (gas chromatography-mass spectrometry) or LC-MS (liquid chromatography-mass spectrometry) and NMR (nuclear magnetic resonance) spectrometry. NMR has the advantage that there is no need to have the compounds in the vapour phase, although the limit of detection using NMR is much poorer than MS.

LC-MS metabolomic studies have been recently undertaken using urine to identify putative colon inflammation biomarkers [18]. The authors note that urinary biomarkers would be preferable to sampling intestinal tissue or blood as the collection of urine samples is non-invasive and multiple samples are more
readily obtained.

The analysis of volatile organic compounds (VOCs) or metabolites (VOMs) is an emerging area of disease diagnosis. VOCs are small molecules that are readily analysed by GC-MS. Other commonly used methods of VOC detection are selected ion flow tube mass spectrometry (SIFT-MS) [Fig. 2], and the similar technique of PTR-MS (proton transfer MS).

There are already several FDA approved tests using volatiles from breath. These include testing for heart transplant rejection, hemoglobin breakdown in children and measurement of hydrogen or methane to diagnose GI lactose or fructose malabsorption. The measurement of breath hydrogen has also been used to diagnose SIBO. Recent work by Španĕl et al. using SIFT-MS quantified the breath pentane concentration of study subjects using the reaction of O2+ with pentane. It was found that patients with CD and UC had significantly elevated breath pentane levels compared to healthy controls [15].

Testing for fecal biomarkers of bowel disease is facile as samples are easily obtained and have been in contact with the gastro intestinal tract. The changes in the odour of feces and flatus reported in many bowel conditions are due to changes in the VOC profile. This altered VOC profile could lead to identification of biomarkers of disease state. A recent pilot study carried out by Ahmed et al. using GC-MS on fecal samples from IBD and IBS patients identified a key set of VOMs which were able to distinguish IBS-D from Active IBD with a sensitivity of 96% and a specificity of 80% [19].

Conclusions
MS techniques show promise for the identification of biomarkers of various GI disease states, which have the potential to reduce invasive testing, improve patient care and reduce healthcare costs.

Instrumentation is still expensive and relatively large, limiting its use in hospital settings and particularly limiting its use for near-patient testing. Also biomarker discovery is still in its infancy and much remains to be clarified in relation to the significance of markers to disease and the underlying metabolic pathways.

However, work to reduce the size and cost of mass spectrometers is well advanced and would open up the possibility of instruments being deployed for point-of-care detection and monitoring of diseases including IBS and IBD.

References
1. Khor B, Gardet A, Xavier RJ. Nature 2011; 474(7351): 307–317.
2. Geboes K. Churchill Livingstone Elsevier 2003; 255–276.
3. Drossman DA, Camilleri M, Mayer EA, Whitehead WE. Gastroenterology 2002; 123(6): 2108–2131.
4. Murray CD, Flynn J, Ratcliffe L, Jacyna MR, et al. Gastroenterology, 2004; 127(6): 1695–1703.
5. Simrén M, Barbara G, Flint HJ, Spiegel BM, Spiller RC, et al. Gut 2013; 62(1): 159–176.
6. Kok L, Elias SG, Witteman BJ, Goedhard JG, Muris JW, et al. Clinical chemistry 2012; 58(6): 989–998.
7. Maxion-Bergemann S, Thielecke F, Abel F, Bergemann R. Pharmacoeconomics 2006; 24: 21–37.
8. Van Rheenen PF, Van de Vijver E, Fidler V. BMJ 2010; 341: doi 10.1136/bmj.c3369.
9. Gisbert JP, McNicholl AG, Gomollon F. Inflammatory bowel diseases 2009; 15(11): 746–1754.
10. Alberici RM, Simas RC, Sanvido GB, Romão W, Lalli PM, Benassi M, Eberlin MN. Analytical and bioanalytical chemistry 2010; 398(1): 265–294.
11. Han NY, Kim EH, Choi J, Lee H, Hahm KB. Journal of Digestive Diseases 2012; 13(10): 497–503.
12. M’Koma AE, Seeleyv EH, Washington MK, Schwartz DA, Muldoon RL, Herline A, Caprioli RM. Inflammatory bowel diseases 2011; 17(4): 875–883.
13. Goo YA, Cain K, Jarrett M, Smith L, et al. Journal of Proteome Research 2012; 11(12): 5650–5662.
14. Collino S, Martin FPJ, Rezzi S. British journal of clinical pharmacology 2013; 75(3): 619–629.
15. Hrdlicka L, Dryahina K, Spanel P, Bortlik M, et al. Gastroenterology 2012; 142(5): S-784.
16. Rao AS, Camilleri M, Eckert DJ, Busciglio I, Burton DD, Ryks M, Zinsmeister AR. Am J Physiol Gastrointest Liver Physiol 2011; 301(5): G919–G928.
17. Garner CE, Smith S, de Lacy Costello B, White P, Spencer R, Probert C, Ratcliffe NM. FASEB J. 2007; 21(8): 1675–1688.
18. Otter D, Cao M, Lin H-M, Fraser F, Edmunds S, et al. J Biomed Biotechnol. 2011; 2011: 974701
19. Ahmed I, Greenwood R, de Lacy Costello B, Ratcliffe NM, Probert CS. PloS one, 2013; 8(3): e58204.

The authors
Ben De Lacy Costello PhD, Norman M. Ratcliffe*PhD and Sophie Shepherd BSc

Institute of Bio-Sensing Technology, University of the West of England, Frenchay Campus, Coldharbour Lane, Bristol, BS16 1QY

*Corresponding author
E-mail: Norman.Ratcliffe@uwe.ac.uk

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C98 Fig1 Bacon

Interference in thyroid function tests – problems and solutions

, 26 August 2020/in Featured Articles /by 3wmedia

Interference in immunoassay is a well described phenomenon and all clinical immunoassays, including thyroid function tests, are potentially at risk. Spurious results can lead to over investigation or mismanagement if not detected, but a proactive approach by the laboratory will help to identify and resolve these problems.

by Dr Olivia Bacon and Dr David J. Halsall

Background
Thyroid disorders are relatively common, and are associated with long-term morbidity and mortality. Clinical signs and symptoms are often non-specific, so reliable laboratory tests are critical for diagnosis. Therefore, thyroid function tests (TFTs) are frequently requested immunoassays with around 10 million results being reported each year by UK laboratories. In the UK, TFTs typically include a high sensitivity immunoassay for thyroid stimulating hormone (TSH) with an immunoassay estimation of non-protein bound thyroxine (fT4), either run simultaneously or added if the TSH value is outside the reference interval [1].

For the majority of tests, both results will be within the reference interval and thyroid disease can be excluded. In some patients TFTs support the diagnosis of hypothyroidism (raised TSH with fT4 low, or lownormal) or hyperthyroidism (TSH undetectable, and fT4 elevated), and these results will confirm clinical findings.  However, due to the high volume of TFTs performed, it is not unusual for the laboratorian to be faced with a set of TFTs that are either internally inconsistent, or incompatible with the clinical details provided. Many medications can affect the thyroid axis, as can other non-thyroidal pathologies; these are often transient, but can cause unusual patterns of TFT. Much rarer genetic or pituitary conditions can also cause discordant TFTs [2]. However, if drug effects are excluded, it is necessary at this stage for the laboratorian to consider that one of the TFT results is incorrect, as analytic error is at least as common as these rare thyroid conditions. As spurious TFT results can lead to over investigation, or even inappropriate treatment, it is critical, but not trivial, for the laboratory to confirm the analytical validity of the TFT results.

In one study of more than 5000 samples received for TSH analysis, assay interference with the potential to adversely affect clinical care was detected in approximately 0.5% of patients [3].  This equates to a rather alarming 50,000 tests per annum in the UK.

Although assay design is continually improving, no routine immunoassay is currently robust to interference.  Technical errors with many routine chemistry methods caused by inappropriate sample collection or handling, chemical or spectral interference can be detected during result validation. However, detection of spurious TFT immunoassay results is more challenging as there is no automatic ‘flag’ from the analyser, and there is usually a wide range of plausible values for these analytes, making it difficult to question those which are ‘suspicious’.  Consequently clinical validation, where results are checked for discordance with the clinical correlates and other laboratory tests, is used to detect potentially incorrect results before reporting.  For TFTs this is aided by the characteristic reciprocal relationship between TSH and fT4 in patients with an intact pituitary–thyroid axis.

Mechanisms of interference in TSH assays
Endogenous interfering antibodies are a well described cause of immunoassay interference [4].  In TSH assays these antibodies can have affinity for TSH itself or towards assay components.  Anti-reagent antibodies can be ‘anti-animal’ antibodies, specific to the species in which the reagent antibody was raised, or weak, polyspecific ‘heterophilic’ antibodies, which may be part of the natural process of the generation of antibody diversity [5]. Anti-animal antibodies are more prevalent in animal handlers or patients treated with therapeutics based on animal immunoglobulins.
Anti-reagent antibodies can interact with either the capture or detection antibodies in two-site assays, blocking the generation of signal in the presence of analyte (false negative result) or by causing antibody cross-linking in the absence of analyte (false positive result) [Fig. 1].

Anti-TSH antibodies can generate high molecular weight TSH : antibody complexes (‘macro-TSH’). Depending on the exact site of the antibody–analyte interaction, false positive TSH results may occur as the macro-TSH is unlikely to be biologically active [6].

Detection of interference in TSH assays
Once suspected, a robust laboratory strategy is required for confirming or excluding assay interference. Method comparison using an alternative method is often used as the first step. Most laboratories use two-site immunoassays for TSH, but assay formulations, antibody species and incubation times vary between manufacturers. Varying amounts of blocking agents, designed to prevent non-specific binding of heterophile antibodies, may be included. Significant disagreement between two TSH methods is a strong indicator of assay interference.

Dilution studies are a simple but effective tool to investigate the analytical validity of an immunoassay. Non-linearity to dilution suggests a result is unreliable.  However, although a good ‘rule in’ test, linearity to dilution alone cannot be used to exclude interference [3,7].

Immunosubtraction is a useful method to confirm the presence of antibody interference. This can be done crudely using polyethylene glycol (PEG) precipitation or more specifically using anti-immunoglobulin agaroses. Proprietary heterophile blocking tubes can also be used to confirm the presence of this class of interferent [3,4]. 

Once assay interference is established it can still be difficult to determine the correct TSH value, as there is no ‘gold standard’ method for TSH.  However, an alternative immunoassay result which gives the expected responses to dilution and immunosubtraction, and correlates with fT4 results plus clinical findings, can be used with a reasonable degree of confidence.

Mechanisms of interference in fT4 assays
fT4 assays present a particular analytical challenge as >99.9% of T4 in the serum is protein bound, and the unbound T4 fraction must be measured without upsetting the equilibrium between the two fractions [8]. Therefore, an abnormal T4 binding protein, or agent which affects binding protein affinity in vitro, has the potential to generate incorrect results.  Most commercial fT4 assays are one-site immunoassays based on competitive principles, using either labelled T4 analogue or anti-T4 antibodies for detection. Both heterophile and anti-T4 antibodies therefore also have the potential to interfere with these methods [4].

Non-esterified fatty acids (NEFAs) are a common T4 displacing agent as they can release T4 from the low affinity, high capacity T4 binding site on albumin.  NEFAs can be  generated in vitro, usually as a consequence of heparin therapy, which stimulates the action of lipoprotein lipase on triglyceride. Although the measured fT4 result is genuinely high, it does not reflect the in vivo situation [9]. 

Familial dysalbuminaemic hyperthyroxinaemia (FDH) is a benign genetic condition where the affinity of albumin for T4 is increased, such that circulating albumin-bound T4 is elevated. Despite the high total T4 (tT4), concentrations of free hormone in vivo are unaffected due to the homeostatic regulation of the thyroid axis. However, FDH is often associated with falsely high fT4 measurements using commercial immunoassays [10] [Fig. 2]. Both the increased affinity of the variant albumin for some labelled T4 analogues, as well as potential disruption of the T4 : albumin equilibrium during the assay, are likely mechanisms.  The presence of the FDH mutation can be confirmed using molecular genetic approaches.

Detecting interference in fT4 assays
Despite the greater analytical challenge, confirming interference in fT4 assays can be easier than for TSH due to the availability of physical separation methods, such as equilibrium dialysis, as ‘gold standard’ assays [8]. However, these methods are technically difficult and not available in most clinical biochemistry laboratories. Also, these methods do not solve the in vitro problems of hormone displacement. 
Again a first approach is often method comparison, using a different immunoassay architecture. Dilution and immunosubtraction studies can also be informative, although some fT4 methods are not robust to matrix effects so careful control experiments are required.
Measurement of total rather than free T4 can be useful in situations where there is a suspicion of abnormal T4 binding proteins. For example, total T4 will be elevated in the presence of anti-T4 antibodies and in FDH.

Clinical causes of aberrant TFTs
As mentioned above there are well described pharmacological and pathological causes of unusual TFTs; an increased awareness of analytical artefacts should not detract from the detection of these conditions.  For example thyroxine treatment, a TSH secreting pituitary tumour (TSHoma), the genetic condition thyroid hormone resistance, FDH or TFT antibody interference can give elevated fT4 results with a TSH within the reference interval. Attempts by the laboratory to exclude assay interference should complement both the diagnosis of transient and genetic thyroid conditions as well as the more common drug related effects.

Conclusions and future directions
Immunoassay manufacturers have invested considerable resources into reducing the potential for antibody-mediated assay interference, for example by including blocking agents, or using antibody fragments rather than intact antibodies as assay reagents. Although these measures are effective, it is worth bearing in mind that changes to assay formulations may introduce novel types of interference. We have observed negative interference in one fT4 assay which appears related to the presence of a blocking agent introduced to reduce the risk of positive interference in this method [11]. Mass spectrometric methods have been introduced to eliminate antibody interference in both fT4 and tT4 methods, but unfortunately the fT4 methods still require careful optimization to avoid interference caused by binding proteins and displacing agents.

As current TFT methods remain prone to analytical interference the clinical laboratory must remain vigilant to the potential for assay interference, promote effective communication with requesting clinicians, and have procedures in place for investigation of discordant results.
 
References
1. Association for Clinical Biochemistry (ACB), British Thyroid Association (BTA), British Thyroid Foundation (BTF). UK guidelines for the use of thyroid function tests.2006; www.acb.org.uk/docs/TFTguidelinefinal.pdf.
2. Gurnell M, Halsall DJ, Chatterjee VK. What should be done when thyroid function tests do not make sense? Clin Endocrinol. (Oxf) 2011; 74(6): 673–678.
3. Ismail AA, Walker PL, Barth JH, Lewandowski KC, Jones R, Burr WA. Wrong biochemistry results: two case reports and observational study in 5310 patients on potentially misleading thyroid-stimulating hormone and gonadotropin immunoassay results. Clin Chem. 2002; 48(11): 2023–2029.
4. Despres N, Grant AM. Antibody interference in thyroid assays: a potential for clinical misinformation. Clin Chem. 1998; 44: 440–454.
5. Kaplan IV, Levinson SS. When is a heterophile antibody not a heterophile antibody? When it is an antibody against a specific immunogen. Clin Chem. 1999; 45: 616–618.
6. Halsall DJ, Fahie-Wilson MN, Hall SK, Barker P, Anderson J, Gama R, Chatterjee VK. Macro thyrotropin-IgG complex causes factitious increases in thyroid-stimulating hormone screening tests in a neonate and mother. Clin Chem. 2006; 52: 1968–1969.
7. Ross HA, Menheere PP, Thomas CM, Mudde AH, Kouwenberg M, Wolffenbuttel BH. Interference from heterophilic antibodies in seven current TSH assays. Ann Clin Biochem. 2008; 45: 616.
8. Thienpont LM, Van Uytfanghe K, Poppe K, Velkeniers B. Determination of free thyroid hormones. Best Pract Res Clin Endocrinol Metab. 2013; in press.
9. Stockigt JR, Lim CF. Medications that distort in vitro tests of thyroid function, with particular reference to estimates of serum free thyroxine. Best Pract Res Clin Endocrinol Metab. 2009; 23(6): 753–767.
10. Cartwright D, O’Shea P, Rajanayagam O, Agostini M, Barker P, Moran C, Macchia E, Pinchera A, John R, Agha A, Ross HA, Chatterjee VK, Halsall DJ. Familial dysalbuminemic hyperthyroxinemia: a persistent diagnostic challenge. Clin Chem. 2009; 55(5): 1044–1046.
11. Bacon O, Gillespie S, Koulouri O, Bradbury S, O’Toole A, Stuart-Thompson D, Taylor K, Pearce S, Gurnell M, Halsall DJ. A patient with multiple Roche serum immunoassay interferences including false negative serum fT4. Ann Clin Biochem. 2013; 50(Suppl 1): T50.
 
The authors
Olivia Bacon PhD and David Halsall* PhD, FRCPath, CSci
Department of Clinical Biochemistry and Immunology, Addenbrooke’s Hospital, Cambridge, UK

*Corresponding author
E-mail: djh44@cam.ac.uk

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C91 Fig1

LC-MS/MS in clinical diagnostic laboratories: screening for catecholamine-producing tumours

, 26 August 2020/in Featured Articles /by 3wmedia

Accurate quantitative targeted analysis of low molecular weight compounds is one of the most important needs in clinical diagnostic laboratories. The enhanced analytical specificity and sensitivity of modern liquid chromatography–tandem mass spectrometry based methods satisfy this requirement for screening of endocrine related disorders, including those affecting steroidogenic systems or overproduction of catecholamines.

by Dr M. Peitzsch and Professor G. Eisenhofer

Liquid chromatography – tandem mass spectrometry (LC-MS/MS)
The development of electrospray ionization (ESI) enabled the introduction of aqueous chromatographic eluates into mass spectrometers, an advance for which John Bennett Fenn was awarded the Nobel Prize in chemistry in 2002. Subsequent refinements in liquid chromatography coupled with ESI mass spectrometry led to analytical applications directed at a broad range of macromolecules from peptides, proteins, glycoproteins and glycolipids to lower molecular weight polar and non-polar compounds, including fatty acids, vitamins, nucleic acids, steroids, amino acids and biogenic amines.

Introduction of tandem mass spectrometry (MS/MS) represented a further breakthrough enabling analyses of relationships between ‘parent or precursor ions’ in the first stage and ‘daughter or product ions’ in the second stage of the instrument [1]. For targeted quantitative analyses, the filtering capabilities and the multiple reaction monitoring (MRM) possible through MS/MS triple quadrupole instruments provide not only high selectivity, but also improved signal-to-noise ratios. In recent years, the increasing commercial availability of stable isotope labelled substances, used as internal standards, has facilitated the application of stable isotope dilution internal standardization as the gold standard for accurate quantitative analyses. Since the physicochemical properties of the target analyte and the stable-isotope-labelled internal standard are similar, this approach compensates for all variations which occur during sample extraction, injection, chromatography, ionization, and ion detection with dow stream improvements in analytical precision and accuracy [2].

The high analytical specificity of LC-MS/MS allows less rigorous sample purification and chromatographic resolution than for standard high performance liquid chromatographic (HPLC) procedures employing ultraviolet, electrochemical or fluorimetric detection. This, and other developments in column chemistry, such as those allowing ultra-high performance liquid chromatography (UPLC), in turn enables higher sample throughput than offered by conventional HPLC procedures. Fusion of LC-MS/MS with other technologies, such as multiplexing parallel LC systems and turbo-flow technology, provides additional advantages for efficient and accurate high-throughput quantitative analyses. Further, automated online sample extraction systems minimize time spent on sample preparation and allow multiple applications to be efficiently handled by one instrument.

All the above possibilities for extending sample throughput, combined with the versatility of a single LC-MS/MS system to take over the jobs of multiple standard HPLC systems, provide advantages that justify the initial high cost of the instrument. Recognized impediments to implementing LC-MS/MS technology include the complexity of the instrumentation associated with the necessity for highly skilled personnel, especially for method development. A lack of standardization combined with a shortage of inter-laboratory comparison programs for quality assurance represent other limitations to acceptance by clinical laboratories.

LC-MS/MS in clinical diagnostics laboratories
The improvements in precision and accuracy offered by LC-MS/MS are now well recognized as offering critical advances over standard HPLC and immunoassay procedures, which are subject to analytical interferences or do not allow precise and accurate identification of structurally-related compounds, such as steroid hormones. Such advances are important to the fields of endocrinology and clinical laboratory medicine where accurate quantitative analysis is crucial for diagnostic purposes [2].

LC-MS/MS applications are now used in clinical and forensic toxicology, such as for drugs-of-abuse testing. In clinical laboratory medicine, LC-MS/MS is used for measurements of endocrine hormones such as steroids, biogenic amines and thyroid hormones, as well as for therapeutic drug monitoring and in new-born screening for assessment of inborn errors of metabolism.

In contrast to commonly used immunoassays, LC-MS/MS enables measurements of multiple analytes for each sample processed. Such determination of analyte profiles includes those for the various thyroid hormones, different vitamin D metabolites and steroid profiles, all available in single analytical runs. Profiles of steroid hormones, although mainly used in research applications, hold considerable promise for the routine clinical assessment of a wide range of
steroidogenic disorders.

LC-MS/MS based screening for catecholamine producing tumours
Pheochromocytomas and paragangliomas (PPGLs) are tumours arising respectively in adrenal and extra-adrenal chromaffin cells that are characterized by an overproduction of catecholamines. Without diagnosis and an appropriate treatment, the excessive secretion of catecholamines by PPGLs can lead to disastrous consequences.

For initial biochemical screening different tests are available, including plasma or urinary measurements of the catecholamines – norepinephrine, epinephrine and dopamine – and their respective O-methylated metabolites – normetanephrine, metanephrine and 3-methoxytyramine. Whereas the free metabolites are usually measured in plasma, analyses in urine are commonly performed after acid hydrolysis in which free metabolites are liberated from sulfate conjugates.

In 2002, Taylor and Singh presented an LC-MS/MS method for the analysis of deconjugated urinary fractionated metanephrines [3]. The outlined advantages of this method over other methods, such as immunoassay and HPLC-ECD (electrochemical detection), included relative freedom from drug interferences, high sample throughput and short chromatographic run times. Subsequently, there has been a plethora of related methods published, including many that enable detection of the much lower concentrations of plasma free metanephrines than urinary deconjugated metanephrines.

Development of new sample preparation procedures, either offline or online to the LC-MS/MS system, have been particularly useful for automated high-throughput procedures [4, 5]. More recent improvements in LC-MS/MS instrumentation have led to improved analytical sensitivity, now even enabling accurate and precise measurements of picomolar plasma concentrations of 3-methoxytyramine, the O-methylated metabolite of dopamine [5–7]. This valuable biomarker not only allows detection of dopamine producing PPGLs, but can also be used to detect malignancy [9]. Using LC-MS/MS, the diagnostic performance of 3-methoxytyramine as a marker of malignancy was characterized by an enhanced diagnostic sensitivity of 86% and specificity of 96% [8] [Fig. 1].

Problems with drug interferences in HPLC-ECD and immunoassay-based methods are largely overcome using LC-MS/MS. For example, problems of acetaminophen (paracetamol) interferences in HPLC-ECD procedures are not a problem for LC-MS/MS [8, 10]. Chromatographic disruptions associated with certain disorders, such as renal insufficiency, are also less of a problem by LC-MS/MS than by HPLC-ECD [8].

Use of plasma free normetanephrine, metanephrine and methoxytyramine for reliable diagnosis of PPGLs requires collection of blood samples after 30 minutes of supine rest and an overnight fast. These conditions pose difficulties for many clinicians, which can result in excessive false-positive results or worse, missed diagnoses when inappropriately high upper cut-offs have been derived from seated sampling. Measurements of urinary metanephrines provide a reasonable alternative test for those situations where blood samples cannot be collected appropriately.

As mentioned above, urinary metanephrines are commonly measured after an acid-hydrolysis deconjugation step. This procedure is based mainly on historical convention, where initially less sensitive instruments did not allow measurements of the much lower urinary concentrations of free rather than deconjugated metanephrines. Improvements in analytical sensitivity now, however, allow analysis of urinary free metanephrines, [11, 12]. Unlike the sulfate-conjugated derivatives, which are produced by a sulfotransferase enzyme located in the gastrointestinal tract, the free metabolites are produced within chromaffin cells. This provides a potential advantage for measurements of the free metabolites. Another advantage is that there are no suitable quality controls or calibrators for measurements of urinary deconjugated metanephrines [12, 13]. Those that are available are almost entirely in the free form so that procedures will always pass quality control even if the deconjugation step is missed and values for patient samples are grossly under-estimated. Measurements of urine free metanephrines avoid this potential pitfall in quality assurance.

Finally, with measurements of urinary free metanephrines it is possible to combine the measurements with urinary catecholamines in a single run [12;14]. This also provides an advantage over measurements of urinary deconjugated metanephrines, where the deconjugation step does not allow measurements of free catecholamines.

The difficulties in applying LC-MS/MS in the clinical chemistry laboratory, such as associated with high initial instrument costs and need for expertise, are easily overshadowed by the analytical advantages. High sample throughput and the analytical versatility offered by LC-MS/MS, which enables rapid method switching, in particular represent important advantages over standard HPLC methods. Nevertheless, such advantages are not easily realized by the small hospital-based laboratory where high sample throughput is not an important consideration. In the US the highly competitive nature of the heath care system is an incentive for centralized testing where efficiency and low operating costs associated with high sample throughput (economy of scale) are more easily realized. In the US the switch from immunoassays or HPLC-based methodology to superior LC-MS/MS technology is therefore likely to remain more advanced than in Europe.

Summary and conclusion
Modern LC-MS/MS systems provide well-recognized accuracy for quantitative targeted measurements of analytes used for clinical diagnostics. The high-throughput capabilities and versatility of LC-MS/MS instrumentation enable multiple applications for rare diseases to be handled by a single instrument. Furthermore, single analyte assays can be extended to accurate profiling by LC-MS/MS assays, providing deeper insight into endocrine metabolic disorders. This, however, remains largely a research-based application and for LC-MS/MS to be readily adapted for routine use in the clinical laboratories, other advantages such as those associated with economy of scale must be appreciated and realized.

References
1.  Glish GL, Vachet RW. The basics of mass spectrometry in the twenty-first century. Nature Reviews Drug Discovery 2003; 2: 140–150.
2.  Vogeser M, Parhofer KG. Liquid chromatography tandem-mass spectrometry (LC-MS/MS) – Technique and applications in endocrinology. Exp Clin Endocrinol Diabetes 2007; 115: 559–570.
3.  Taylor RL, Singh RJ. Validation of liquid chromatography-tandem mass spectrometry method for analysis of urinary conjugated metanephrine and normetanephrine for screening of pheochromocytoma. Clinical Chemistry 2002; 48: 533–539.
4.  Lagerstedt SA, O’Kane DJ, et al. Measurement of plasma free metanephrine and normetanephrine by liquid chromatographym-tandem mass spectrometry for diagnosis of pheochromocytoma. Clinical Chemistry 2004; 50: 603–611.
5.  Peaston RT, Graham KS, et al. Performance of plasma free metanephrines measured by liquid chromatography-tandem mass spectrometry in the diagnosis of pheochromocytoma. Clinica Chimica Acta 2010; 411: 546–552.
6.  Eisenhofer G, Goldstein DS, et al. Biochemical and clinical manifestations of dopamine-producing paragangliomas: Utility of plasma methoxytyramine. J Clin Endocrinol Metab 2005; 90: 2068–2075.
7.  Eisenhofer G, Lenders JW, et al. Plasma methoxytyramine: A n ovel biomarker of metastatic pheochromocytoma and paraganglioma in relation to established risk factors of tumour size, location and SDHB mutation status. European Journal of Cancer 2012; 48(11): 1739–1749.
8.  Peitzsch M, Prejbisz A, et al. Analysis of plasma 3-methoxytyramine, normetanephrine and metanephrine by ultra performance liquid chromatography – tandem mass spectrometry: utility for diagnosis of dopamine-producing metastatic phaeochromocytoma. Ann Clin Biochem 2013; 50: 147–155.
9.  Eisenhofer G, Tischler AS, et al. Diagnostic Tests and Biomarkers for Pheochromocytoma and Extra-adrenal Paraganglioma: From Routine Laboratory Methods to Disease Stratification. Endocrine Pathology 2012; 23: 4–14.
10.  Petteys JB, Graham KS, et al. Performance characteristics of an LC–MS/MS method for the determination of plasma metanephrines. Clinica Chimica Acta 2012; 413: 1459–1465.
11.  Boyle JG, Davidson DF, et al. Comparison of diagnostic accuracy of urinary free metanephrines, vanillyl mandelic acid, and catecholamines and plasma catecholamines for diagnosis of pheochromocytoma. J Clin Endocrinol Metab 2007; 92: 4602–4608.
12.  Peitzsch M, Pelzel D, et al. Simultaneous liquid chromatography tandem mass spectrometric determination of urinary free metanephrines and catecholamines, with comparisons of free and deconjugated metabolites. Clinica Chimica Acta 2013; 418: 50–58.
13.  Simonin J, Gerber-Lemaire S, et al. Synthetic calibrators for the analysis of total metanephrines in urine: Revisiting the conditions of hydrolysis. Clinica Chimica Acta 2012; 413: 998–1003.
14.  Whiting MJ. Simultaneous measurement of urinary metanephrines and catecholamines by liquid chromatography with tandem mass spectrometric detection. Ann Clin Biochem 2009; 46: 129–136.

The authors
Mirko Peitzsch*1 PhD and
Graeme Eisenhofer1,2 PhD

1 Institute for Clinical Chemistry and Laboratory Medicine, University Hospital Carl Gustav Carus at the Technical University Dresden, Dresden, Germany
2 Department of Medicine III, University of Dresden, Dresden, Germany

*Corresponding author
E-mail: Mirko.Peitzsch@uniklinikum-dresden.de

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p32 01

Functional evaluation of chemistry analyser

, 26 August 2020/in Featured Articles /by 3wmedia

The aim of this study was to assess the practicability and evaluate the analytical characteristics of the Mindray BS-2000M, a new automatic chemistry analyser, manufactured by Shenzhen Mindray Bio-Medical Electronics Co., Ltd (Mindray Shenzhen, China).

The evaluation involved 21 clinical chemistry parameters measured using indirect potentiometry, spectrophotometric and immunoturbidimetric assays.

Spectrophotometric assays

Alanine aminotransferase (ALT, according to IFCC with-out pyridoxal phosphate), aspartate aminotransferase (AST, according to IFCC method), gamma-glutamyltransferasa (GGT, according to Szasz), total bilirubin (TBIL, Diazotized sulfanilic acid method), calcium (Ca, Arsenazo III method), creatine kinase (CK, IFCC method), creatinine (Crea, modified Jaffe method), glucose (Glu, Hexokinase method), high density lipoprotein-cholesterol (HDL-C, direct method), magnesium (Mg, Xylidyl blue method), phosphorus (P, Phosphomolybdate method), total cholesterol (TC, Cholesterol oxidase – Peroxidase method), triglycerides (TG, Glycerokinase Peroxidase – Peroxidase method), total protein (TP, Biuret method), uric acid (UA, Uricase-Peroxidase method), iron (Fe, Colorimetric assay-Ferrozine), α-amylase [α-AMY, substrate: 4, 6- ethylidene-(G7)-1, 4-nitrophenyl-(G1) –α, D-maltoheptaoside (EPS-G7), enzymatic colorimetric assay according to IFCC method] and urea (Urea, Urease-glutamate dehydrogenase).

Immunoturbidimetric assays
Apolipoprotein A1 (ApoA1).

Indirect potentiometry assays (ISE)
Sodium (Na), potassium (k) and chloride (Cl).

Analytical evaluation
Among all the available parameters to verify the Mindray BS-2000M analytical performance, those which are more frequently requested in routine clinical practice were selected (e.g., glucose, creatinine, total protein).

An imprecision study was carried out according to the CLSI EP5-A2 guideline [1]. The within run imprecision was evaluated using two control materials. Final results were expressed as coefficient of variation (CV%). We checked that these CV satisfied the allowable maximum imprecision based on biological variability [2]. These data were taken from the listing of biological variation by Ricos et al [3], recently updated in 2012.

The inaccuracy study was done according to the CLSI EP9-A2 guideline [4], measuring at least 40 patient samples for the two analysers (Mindray BS-2000M and ADVIA 2400 Siemens Healthcare Diagnostics, USA) for 5 days.

In the inaccuracy study the mean bias and 95% confidence interval (CI) was calculated with the Bland-Altman plot analysis, and the linear regression was assessed using Passing-Bablok regression method [5-6].

The results of the imprecision study [Table 1] showed that for all the parameters imprecision was lower than the maximal allowable applying to biological variability based criteria, with the exception of sodium (0.7%) and chloride (0,8%) in control 1 and total proteins (1,7%) in control 2. Nevertheless, these three parameters fulfill the commonly used “State of the art” criterion. According to this criterion, the maximal allowable imprecision for physiological concentrations must be less than the 0.20 fractile of the between-run imprecision (CV) of the laboratories in a external quality assessment scheme (7). The CV% limit for these three parameters following this approach would be 0.9% for Na, 1.6% for Cl and 1.7% for TP. 
In the comparison study, a close correlation was observed for all parameters studied (r range: 0.92 – 1.00) [Table 2]. It is noted that there were no significant differences for 11 of the 21 parameters studied. For the other parameters statistically significant differences were found but, except for creatinine, those differences were not considered to have a clinical significance. The constant and proportional differences may be due to different standardization of both procedures. Traceable calibration materials should be used related to the reference method and also switchable materials that reveal the degree of deviation of multiple methods with respect to the true value should be used [8].

References
1. Clinical and Laboratory Standards Institute. Evaluation of precision performance of quantitative measurement methods; approved guideline -second edition. CLSI document EP5-A2. Wayne, PA:CLSI, 2004.
2. Fraser CG, et al. Proposed quality specifications for the imprecision and inaccuracy of analytical systems for clinical chemistry. Eur J Clin Chem Clin Biochem 1992; 30: 311.
3. Ricos C, et al. Desirable quality specifications for total error, imprecision, and bias, derived from biological variation. http://www.Westgard.com/biodatabase1.htm. Accessed on February 15, 2013.
4. Clinical and Laboratory Standards Institute. Method comparison and bias estimation using patient samples; approved guideline – second edition. CLSI document EP9-A2. Wayne, PA: CLSI, 2002.
5. Bland JM, et al. Statistical methods for assessing agreement between two methods of clinical measurement. Lancet 1986; 1: 307.
6. Passing H, et al. A new biometrical procedure for testing the equality of measurements from two different analytical methods. Application of linear regression procedures for method comparison studies in clinical chemistry, Part I. J Clin Chem Clin Biochem 1983; 21: 709.
7. Sebastian-Gámbaro, et al. An improvement on the criterion of the state of the art to estimate the maximal allowable imprecision. Eur J Clin Chem Biochem. 1996; 34: 445.
8. Documento de consenso. Sociedad Española de Bioquímica Clínica (SEQC) y Sociedad Española de Nefrología (SEN). Recomendaciones sobre la utilización de ecuaciones para la estimación del filtrado glomerular en adultos. Química Clínica 2006; 25: 423.

The author
Dr. Jose Luis Bedini,
Hospital Clinic I Provincial De Barcelona,
Barcelona,
Spain


MINDRAY

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CLI 1310 SNIBE 03

CLIA Analyzer – Since 1995

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Service – Speed – Superiority

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C97a Tosh Gene testing gets primed for the mass market

Gene testing gets primed for the mass market

, 26 August 2020/in Featured Articles /by 3wmedia

Questions about gene testing were highlighted dramatically this summer after Hollywood superstar Angelina Jolie announced she had undergone a preventive double mastectomy. The reason: gene tests showed she carried the breast cancer-linked BRCA1 mutation. In an Op-Ed piece in the ‘New York Times’, the actress encouraged other women, who believed they were also at risk, to also get tested.
Ms. Jolie’s decision has been hailed by some, criticized by others. However, it may well mark a watershed, when gene testing began a paradigm shift to the mass market. Her announcement, for example, led to a doubling of cancer checks at top clinics in London.

US Patent ruling will bring costs down
Such trends are likely to be reinforced, strongly, by a US Supreme Court ruling in June 2013 (shortly after Ms. Jolie’s announcement) that human genes cannot be patented. The decision reversed three decades of US intellectual property case law, and within days, several US labs announced they would be offering BRCA tests. The latter could previously only be tested for by a single company, Myriad Genetics. Though patent laws are national matters, it is likely that the US court ruling will make an impact elsewhere. In Europe, the EU Biotech Directive allows patenting of gene tests, while Myriad itself recently won a Federal Court ruling in Australia upholding its BRCA patents.

Revenues from genetic screening were $5.9 billion in the US in 2011, according to a study by the respected Battelle Institute. To put the figure in perspective, this is about 10% of the total US clinical testing market. Globally, sales of genetic tests could be conservatively estimated at $10-$15 billion. Scores of vendors already offer a range of tests – from selective screening for some hundred-odd major disease genes to complete sequencing of a person’s genome.

The once-prohibitive costs of gene tests have seen downwards pressure over the past decade. As with other consumer technology cycles, lower prices are expected to drive an expansion in affordability, in users and revenues, in a virtuous cycle. One of the key market catalysts has been direct-to-consumer testing (DTC) companies. US DTC leader 23AndMe has seen its gene tests used by about 200,000 consumers. For just $99, the company provides information on 50 carrier traits, 20 drug classes and disease risk information. 23AndMe is currently seeking FDA certification. European firms are less visible. A leading vendor, deCode Genetics, shut down its DTC service after being acquired by Amgen in late 2012. The Iceland-based firm had been offering its deCodeme personal genomic scanning service for just under $1,000, as well as screening for cardiovascular diseases and common cancers –  in a package for $350. Other major DTC players in Europe are also from the US, among them Navigenics, DNADirect and Genelex.

Price falls are now almost certain to accelerate after the US Supreme Court decision on gene patents. Myriad, for example, was using its monopoly on BRAC to charge $3,000 and more for a test. After the Court ruling, the test is projected to see a steep fall in its price to just $100.

Drivers of consumer tests
The key reason for the growth of DTC is that genetic testing has so far largely been restricted to specialist labs and top academic medical centres. In spite of a sharp rise in the number of registered tests to over 7,500, most have yet to be translated into clinical applications.

A study by United Health, the US managed health group, found 63% of physicians saying that screening provided them “the ability to diagnose conditions that would otherwise be unknown.” However, a larger number, about three of four, also noted there were patients in their practices “who would benefit from a genetic test but have not yet had one.” United Health estimates that the US testing market alone would reach about $15 to $21 billion by 2021. In Europe too, an increase in formal healthcare settings for gene testing is likely to be welcomed, given growing concerns about DTC. A recent survey of clinical geneticists found 84% of respondents expressing concern about “replacing face-to-face supervision by a medical doctor with supervision via telephone” through DTC testing firms. A little less than half the respondents said they had at least one patient make contact with them after they had undergone a DTC genetic test, and 86% said they would provide post-test counselling to such patients. The survey posed the likelihood of a ‘cascade effect’ in the future, particularly should physicians spend more time on patients with DTC test results that are not medical priorities.  As a result, it seems market growth will be accompanied by the encouragement of general hospitals and physician practices to do gene testing.

The emergence of personal medicine
The impact of mass gene testing will clearly be enormous. One new frontier is personal medicine, where medicine choice and dosages would be prescribed according to a patient’s specific genetic profile. Further down the horizon may be an end to several inherited diseases. In January 2009, the UK saw the birth of the first baby “tested preconceptionally for a genetic form of breast cancer.” The baby was born at University College London (UCL) Hospital, using Preimplantation Genetic Diagnosis, which involves undertaking an in vitro fertilization treatment cycle to have several embryos available for genetic tests.

More recently, UCL announced that its scientists had developed a microchip test to analyse 35 different genetic mutations linked to cancer, and enable doctors to identify and target specific genes from a small sample of tissue. UCL Professor Charles Swanton said the test marked the beginning of tailored cancer care in the NHS.

Ethical questions remain
Nevertheless, there is some way to go. One barrier consists of still-lingering questions about the ethical implications of gene tests.
Here, the first issue is uncertainty. Even now, gene testing (including that for the high-profile BRCA 1 and 2) only predicts an increase in risk, not certainty of disease. This transfers the choice and responsibility for an irreversible prophylactic intervention to a patient, and to his or her best guess. It also rules out the possibility of effective, new and less-invasive surgical interventions emerging in the future.

Such technology evolution challenges – of better choices becoming available – apply broadly to all genetic testing. Some tests do not (as yet) identify all possible gene mutations which lead to a particular disease, or have only limited predictive value. Finally, it remains unclear whether a mutation is not just a symptom of a disease, rather than being a cause.

For example, in cystic fibrosis (CF), there is still no way to predict disease severity, even when a fetus has inherited two mutations. Parents thus face the dilemma of deciding whether to continue or end a pregnancy without full knowledge. In the meanwhile, even as data on CF mutations grows steadily by the year, promising new drug therapies are becoming available. For example, Ivacaftor (Vertex Pharmaceuticals), which addresses the G551D mutation affecting 4% of CF patients, is now being evaluated for the more prevalent F508del mutation.

The above dilemmas are aggravated by the question of false positives and false negatives. In spite of being at the cutting edge of mass screening techniques for Down’s syndrome and neural tube defects, Quad tests for pregnant women still retain a 5% false positive and 20% false negative rate. Elsewhere, while metabolic genetic disorders such as phenylketonuria can be identified by fetal gene tests and then addressed by dietary changes, many others lack treatment options.
The broader debate on gene tests and its ethics is unlikely to go away soon, but policy makers are broadly swinging to accept its inevitability. The Human Genetics Commission in Britain stated in April 2011 that there were “no ethical barriers preventing the use of genetic testing in couples before they conceive.” Within months, the German parliament enacted a law to allow testing fertilized embryos for possible life-threatening genetic defects, via Preimplantation Genetic Diagnosis (like that launched by University College London in early 2009).  Critics in Germany have been especially vociferous, calling the move “a step toward designer babies.”
One of the biggest concerns about genetic testing is the emergence of ‘a la carte’ health insurance, providing choice of cover and premium based on a person’s particular disease risks and (eventual) treatment requirements, rather than loading the highest-risk beneficiaries atop the lower-risk ones. 

In the US, resulting concerns about discrimination due to genetic testing led to the 2008 Genetic Information Nondiscrimination Act (GINA), which bars denial of health insurance or employment because of a genetic predisposition to a particular disease.

In Europe, different laws and regulations in the Member States seek to address ethical questions. A major hurdle here is the lack of an “approved definition of a genetic test,”  in spite of the EU-funded project EuroGentest. One of the latter’s goals was to “try to develop at least some key elements for a working definition” of a gene test.

https://clinlabint.com/wp-content/uploads/sites/2/2020/08/C97a_Tosh_Gene-testing-gets-primed-for-the-mass-market.jpg 299 300 3wmedia https://clinlabint.com/wp-content/uploads/sites/2/2020/06/clinlab-logo.png 3wmedia2020-08-26 09:46:162021-01-08 11:38:21Gene testing gets primed for the mass market
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